PDB entry 1dgt

View 1dgt on RCSB PDB site
Description: crystal structure of nad+-dependent DNA ligase
Class: ligase
Keywords: amp complex, nad+-dependent
Deposited on 1999-11-25, released 2000-11-27
The last revision prior to the SCOPe 2.06 freeze date was dated 2004-03-30, with a file datestamp of 2007-04-25.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.254
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA ligase
    Species: Thermus filiformis
    Database cross-references and differences (RAF-indexed):
    • GB AF061572
    Domains in SCOPe 2.06: d1dgta4, d1dgta5, d1dgta6
  • Chain 'B':
    Compound: DNA ligase
    Species: Thermus filiformis
    Database cross-references and differences (RAF-indexed):
    • GB AF061572 (0-End)
  • Heterogens: ZN, AMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1dgtA (A:)
mtreearrrinelrdliryhnyryyvladpeisdaeydrllrelkeleerfpefkspdsp
teqvgarpleptfrpvrhptrmysldnaftyeevlafeerlereaeapslytvehkvdgl
svlyyeegvwstgsgdgevgeevtqnlltiptiprrlkgvpdrlevrgevympieaflrl
neeleergekvfknprnaaagslrqkdprvtakrglratfyalglglgleesglksqyel
llwlkekgfpvehcyekalgaegveevyrrglaqrhalpfeadgvvlklddltlwgelgy
taraprfalaykfpaeeketrlldvvfqvgrtgrvtpvgvlepvfiegsevsrvtlhnes
yieeldirigdwvlvhkaggvipevlrvlkerrtgkerpirwpeacpecghrlvkegkvh
rcpnplcpakrfeairhyasrkamdieglgeklierllekglvrdvadlyhlrkedllgl
ermgeksaqnllrqieeskhrglerllyalglpgvgevlarnlarrfgtmdrlleaslee
lieveevgeltarailetlkdpafrdlvrrlkeagvsmeskeevsdllsgltfvltgels
rpreevkallgrlgakvtdsvsrktsylvvgenpgsklekaralgvavlteeefwrflke
kgapvpa

    Sequence, based on observed residues (ATOM records): (download) 
    >1dgtA (A:)
mtreearrrinelrdliryhnyryyvladpeisdaeydrllrelkeleerfpefkspdsp
teqvgarpleptfrpvrhptrmysldnaftyeevlafeerlereaeapslytvehkvdgl
svlyyeegvwstgsgdgevgeevtqnlltiptiprrlkgvpdrlevrgevympieaflrl
neeleergekvfknprnaaagslrqkdprvtakrglratfyalglglgleesglksqyel
llwlkekgfpvehcyekalgaegveevyrrglaqrhalpfeadgvvlklddltlwgelgy
taraprfalaykfpaeeketrlldvvfqvgrtgrvtpvgvlepvfiegsevsrvtlhnes
yieeldirigdwvlvhkaggvipevlrvlkerrtgkerpirwpeacpecghrlvkegkvh
rcpnplcpakrfeairhyasrkamdieglgeklierllekglvrdvadlyhlrkedllgl
ermgeksaqnllrqieeskhrglerllyalglpgvgevlarnlarrfgtmdrlleaslee
lieveevgeltarailetlkdpafrdlvrrlkeagvsmesk

  • Chain 'B':
    No sequence available.