PDB entry 1dgr

View 1dgr on RCSB PDB site
Description: Refined crystal structure of canavalin from jack bean
Class: plant protein
Keywords: duplicated domains beta barrel helical loop, plant protein
Deposited on 1999-11-25, released 1999-12-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.18
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgra_
  • Chain 'B':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgrb_
  • Chain 'C':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgrc_
  • Chain 'M':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgr.4
  • Chain 'N':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgr.4
  • Chain 'V':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgr.2
  • Chain 'W':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgr.2
  • Chain 'X':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgr.1
  • Chain 'Y':
    Compound: canavalin
    Species: Canavalia ensiformis [TaxId:3823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgr.1
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgrA (A:)
nnpylfrsnkfltlfknqhgslrllqrfnedteklenlrdyrvleycskpntlllphhsd
sdllvlvlegqailvlvnpdgrdtykldqgdaikiqagtpfylinpdnnqnlrilkfait
frrpgtvedfflsstkrlpsylsafsknfleasydspydeieqtllqeeqegvivkmp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgrB (B:)
nnpylfrsnkfltlfknqhgslrllqrfnedteklenlrdyrvleycskpntlllphhsd
sdllvlvlegqailvlvnpdgrdtykldqgdaikiqagtpfylinpdnnqnlrilkfait
frrpgtvedfflsstkrlpsylsafsknfleasydspydeieqtllqeeqegvivkmp

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgrC (C:)
nnpylfrsnkfltlfknqhgslrllqrfnedteklenlrdyrvleycskpntlllphhsd
sdllvlvlegqailvlvnpdgrdtykldqgdaikiqagtpfylinpdnnqnlrilkfait
frrpgtvedfflsstkrlpsylsafsknfleasydspydeieqtllqeeqegvivkmp

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1dgrM (M:)
mqlrryaatlsegdiivipssfpvalkaasdlnmvgigvnaennernflaghkenvirqi
prqvsdltfpgsgeeveellenqkesyfvdgqp

    Sequence, based on observed residues (ATOM records): (download) 
    >1dgrM (M:)
qlrryaatlsegdiivipssfpvalkaasdlnmvgigvnaennernflaghkenvirqip
rqvsdltfpgsgeeveellenqkesyfvdgqp

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1dgrN (N:)
dkpfnlrsrdpiysnnygklyeitpeknsqlrdldillnclqmnegalfvphynsratvi
lvanegraevelvgleqqq

    Sequence, based on observed residues (ATOM records): (download) 
    >1dgrN (N:)
dkpfnlrsrdpiysnnygklyeitpeknsqlrdldillnclqmnegalfvphynsratvi
lvanegraevelvgle

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1dgrV (V:)
dkpfnlrsrdpiysnnygklyeitpeknsqlrdldillnclqmnegalfvphynsratvi
lvanegraevelvgleqqq

    Sequence, based on observed residues (ATOM records): (download) 
    >1dgrV (V:)
dkpfnlrsrdpiysnnygklyeitpeknsqlrdldillnclqmnegalfvphynsratvi
lvanegraevelvgle

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgrW (W:)
mqlrryaatlsegdiivipssfpvalkaasdlnmvgigvnaennernflaghkenvirqi
prqvsdltfpgsgeeveellenqkesyfvdgqp

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >1dgrX (X:)
dkpfnlrsrdpiysnnygklyeitpeknsqlrdldillnclqmnegalfvphynsratvi
lvanegraevelvgleqqq

    Sequence, based on observed residues (ATOM records): (download) 
    >1dgrX (X:)
dkpfnlrsrdpiysnnygklyeitpeknsqlrdldillnclqmnegalfvphynsratvi
lvanegraevelvgl

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgrY (Y:)
mqlrryaatlsegdiivipssfpvalkaasdlnmvgigvnaennernflaghkenvirqi
prqvsdltfpgsgeeveellenqkesyfvdgqp