PDB entry 1dgi

View 1dgi on RCSB PDB site
Description: Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155
Class: Virus/Receptor
Keywords: CD155, PVR, HUMAN POLIOVIRUS, POLIOVIRUS-RECEPTOR COMPLEX, Icosahedral virus, Virus-Receptor COMPLEX
Deposited on 1999-11-24, released 2000-01-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: vp1
    Species: Poliovirus [TaxId:12080]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03300 (0-4)
      • conflict (0-1)
      • conflict (3-4)
    Domains in SCOPe 2.08: d1dgi1_
  • Chain '2':
    Compound: vp2
    Species: Poliovirus [TaxId:12080]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgi2_
  • Chain '3':
    Compound: vp3
    Species: Poliovirus [TaxId:12080]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgi3_
  • Chain '4':
    Compound: vp4
    Species: Poliovirus [TaxId:12080]
    Database cross-references and differences (RAF-indexed):
    • PDB 1DGI (0-62)
    Domains in SCOPe 2.08: d1dgi4_
  • Chain 'R':
    Compound: poliovirus receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dgir_

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgi1 (1:)
gssstaatsrdalpnteasgpthskeipaltavetgatnplvpsdtvqtrhvvqhrsrse
ssiesffargacvtimtvdnpasttnkdklfavwkitykdtvqlrrklefftysrfdmel
tfvvtanftetnnghalnqvyqimyvppgapvpekwddytwqtssnpsifytygtapari
svpyvgisnayshfydgfskvplkdqsaalgdslygaaslndfgilavrvvndhnptkvt
skirvylkpkhirvwcprppravayygpgvdykdgtltplstkdltty

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgi2 (2:)
eacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqptepdvaacrfy
tldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnaskfhqgalgv
favpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfcpvdyllgng
tllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailplaplnfasess
peipitltiapmccefnglrnitlprlq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgi3 (3:)
glpvmntpgsnqyltadnfqspcalpefdvtppidipgevknmmelaeidtmipfdlsat
kkntmemyrvrlsdkphtddpilclslspasdprlshtmlgeilnyythwagslkftflf
cgsmmatgkllvsyappgadppkkrkeamlgthviwdiglqssctmvvpwisnttyrqti
ddsfteggyisvfyqtrivvplstpremdilgfvsacndfsvrllrdtthieqka

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dgi4 (4:)
xgaqvssqkvgahensstinyttinyyrdsasnaaskqdfsqdpskftepikdvliktap
mln

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1dgiR (R:)
dvvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsys
eskrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqn
taevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwi
lvpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcd
arsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltv
qv

    Sequence, based on observed residues (ATOM records): (download) 
    >1dgiR (R:)
vvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsyse
skrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqnt
aevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwil
vpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcda
rsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltvq
v