PDB entry 1dfm

View 1dfm on RCSB PDB site
Description: Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer
Class: hydrolase/DNA
Keywords: restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase-DNA complex
Deposited on 1999-12-06, released 2000-02-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: endonuclease bglii
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dfma_
  • Chain 'B':
    Compound: endonuclease bglii
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dfmb_
  • Chain 'C':
    Compound: DNA (5'-d(*tp*ap*tp*tp*ap*tp*ap*gp*ap*tp*cp*tp*ap*tp*ap*a)-3')
  • Chain 'D':
    Compound: DNA (5'-d(*tp*ap*tp*tp*ap*tp*ap*gp*ap*tp*cp*tp*ap*tp*ap*a)-3')
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dfmA (A:)
mkiditdynhadeilnpqlwkeieetllkmplhvkasdqaskvgslifdpvgtnqyikde
lvpkhwknnipipkrfdflgtdidfgkrdtlvevqfsnypfllnntvrselfhksnmdid
eegmkvaiiitkghmfpasnsslyyeqaqnqlnslaeynvfdvpirlvgliedfetdidi
vsttyadkrysrtitkrdtvkgkvidtntpntrrrkrgtivty

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1dfmB (B:)
mkiditdynhadeilnpqlwkeieetllkmplhvkasdqaskvgslifdpvgtnqyikde
lvpkhwknnipipkrfdflgtdidfgkrdtlvevqfsnypfllnntvrselfhksnmdid
eegmkvaiiitkghmfpasnsslyyeqaqnqlnslaeynvfdvpirlvgliedfetdidi
vsttyadkrysrtitkrdtvkgkvidtntpntrrrkrgtivty

    Sequence, based on observed residues (ATOM records): (download) 
    >1dfmB (B:)
mkiditdynhadeilnpqlwkeieetllkmplhvkasdqaskvgslifdpvgtnqyikde
lvpkhwknnipipkrfdflgtdidfgkrdtlvevqfsnypfllnntvrselfhksnmdid
eegmkvaiiitkghmfpasnsslyyeqaqnqlnslaeynvfdvpirlvgliedfetdidi
vsttyadkrysrtitkrdtvkgkvidtntrkrgtivty

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.