PDB entry 1deq

View 1deq on RCSB PDB site
Description: the crystal structure of modified bovine fibrinogen (at ~4 angstrom resolution)
Class: blood clotting
Keywords: coiled-coil, blood clotting
Deposited on 1999-11-15, released 2000-02-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.257
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fibrinogen (alpha chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqa_
  • Chain 'B':
    Compound: fibrinogen (beta chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqb_
  • Chain 'C':
    Compound: fibrinogen (gamma chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqc_
  • Chain 'D':
    Compound: fibrinogen (alpha chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqd_
  • Chain 'E':
    Compound: fibrinogen (beta chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqe_
  • Chain 'F':
    Compound: fibrinogen (gamma chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqf_
  • Chain 'M':
    Compound: fibrinogen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 1DEQ (0-89)
    Domains in SCOPe 2.08: d1deqm_
  • Chain 'N':
    Compound: fibrinogen (alpha chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqn_
  • Chain 'O':
    Compound: fibrinogen (beta chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqo_
  • Chain 'P':
    Compound: fibrinogen (gamma chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqp_
  • Chain 'Q':
    Compound: fibrinogen (alpha chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqq_
  • Chain 'R':
    Compound: fibrinogen (beta chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqr_
  • Chain 'S':
    Compound: fibrinogen (gamma chain)
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1deqs_
  • Chain 'Z':
    Compound: fibrinogen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 1DEQ (0-89)
    Domains in SCOPe 2.08: d1deqz_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1deqA (A:)
edgsdppsgdfltegggvrgprlverqqsacketgwpfcsdedwntkcpsgcrmkglide
vdqdftsrinklrdslfnyqknskdsntltknivelmrgdfakannndntfkqinedlrs
rieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsckgscsralehkvdled
yknqqkqleqviainllpsrdiqylpilkmstitgpvprefksqlqeaplewkallemqq
tkmvletfggdghargdsvsqgtglapgsprkpgtssignvnpgsygpgssgtwnpgrpe
pgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwn
tgssgsssfrpdssghgnirpsspdwgtfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqA (A:)
ntkcpsgcrmkglidevdqdftsrinklrdslfnyqknskdsntltknivelmrgdfaka
nnndntfkqinedlrsrieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsc
kgscsralehkvdledyknqqkqleqviainllpsrdiqylpilkmstitgpvprefksq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1deqB (B:)
kverkppdadgclhadpdlgvlcptgcklqdtlvrqerpirksiedlrntvdsvsrtsss
tfqyitllknmwkgrqnqvqdnenvvneysshlekhqlyidetvknniptklrvlrsile
nlrskiqklesdvstqmeycrtpctvtcnipvvsgkecekiirnegetsemyliqpedss
kpyrvycdmktekggwtviqnrqdgsvdfgrkwdpykqgfgniatnaegkkycgvpgeyw
lgndrisqltnmgptklliemedwkgdkvtalyegftvqneankyqlsvskykgtagnal
iegasqlvgenrtmtihnsmffstydrdndgwkttdprkqcskedgggwwynrchaanpn
gryywggaytwdmakhgtddgvvwmnwqgswysmkkmskmirpyfpeq

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqB (B:)
klqdtlvrqerpirksiedlrntvdsvsrtssstfqyitllknmwkgrqnqvqdnenvvn
eysshlekhqlyidetvknniptklrvlrsilenlrskiqklesdvstqmeycrtpctvt
cnipvvsgkecekiirnegetsemyliqpedsskpyrvycdmktekggwtviqnrqdgsv
dfgrkwdpykqgfgniatnaegkkycgvpgeywlgndrisqltnmgptklliemedwkgd
kvtalyegftvqneankyqlsvskykgtagnaliegasqlvgenrtmtihnsmffstydr
dndgwkttdprkqcskedgggwwynrchaanpngryywggaytwdmakhgtddgvvwmnw
qgswysmkkmskmirpyfpe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1deqC (C:)
yvatrdnccilderfgsycpttcgiadflnnyqtsvdkdlrtlegilyqvenktsearel
vkaiqisynpdqpskpnniesatknsksmmeeimkyetlisthestirflqeiynsnsqk
ivnlrdkvvqleancqepcqdtvkihdvtgrdcqdvankgakesglyfirplkakqqflv
yceidgsgngwtvfqkrldgsldfkknwiqykegfghlsptgntefwlgnekihlistqs
tipyvlriqledwngrtstadyasfkvtgendkyrltyayfiggdagdafdgydfgddss
dkfftshngmqfstwdsdndkydgncaeqdgsgwwmnkchaghlngvyyqggtysktstp
ngydngiiwatwksrwysmkkttmkiiplnrlaigegqqhqlggakqagdv

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqC (C:)
dflnnyqtsvdkdlrtlegilyqvenktsearelvkaiqisynpdqpskpnniesatkns
ksmmeeimkyetlisthestirflqeiynsnsqkivnlrdkvvqleancqepcqdtvkih
dvtgrdcqdvankgakesglyfirplkakqqflvyceidgsgngwtvfqkrldgsldfkk
nwiqykegfghlsptgntefwlgnekihlistqstipyvlriqledwngrtstadyasfk
vtgendkyrltyayfiggdagdafdgydfgddssdkfftshngmqfstwdsdndkydgnc
aeqdgsgwwmnkchaghlngvyyqggtysktstpngydngiiwatwksrwysmkkttmki
iplnrlaige

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1deqD (D:)
edgsdppsgdfltegggvrgprlverqqsacketgwpfcsdedwntkcpsgcrmkglide
vdqdftsrinklrdslfnyqknskdsntltknivelmrgdfakannndntfkqinedlrs
rieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsckgscsralehkvdled
yknqqkqleqviainllpsrdiqylpilkmstitgpvprefksqlqeaplewkallemqq
tkmvletfggdghargdsvsqgtglapgsprkpgtssignvnpgsygpgssgtwnpgrpe
pgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwn
tgssgsssfrpdssghgnirpsspdwgtfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqD (D:)
ntkcpsgcrmkglidevdqdftsrinklrdslfnyqknskdsntltknivelmrgdfaka
nnndntfkqinedlrsrieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsc
kgscsralehkvdledyknqqkqleqviainllpsrdiqylpilkmstitgpvprefksq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1deqE (E:)
kverkppdadgclhadpdlgvlcptgcklqdtlvrqerpirksiedlrntvdsvsrtsss
tfqyitllknmwkgrqnqvqdnenvvneysshlekhqlyidetvknniptklrvlrsile
nlrskiqklesdvstqmeycrtpctvtcnipvvsgkecekiirnegetsemyliqpedss
kpyrvycdmktekggwtviqnrqdgsvdfgrkwdpykqgfgniatnaegkkycgvpgeyw
lgndrisqltnmgptklliemedwkgdkvtalyegftvqneankyqlsvskykgtagnal
iegasqlvgenrtmtihnsmffstydrdndgwkttdprkqcskedgggwwynrchaanpn
gryywggaytwdmakhgtddgvvwmnwqgswysmkkmskmirpyfpeq

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqE (E:)
klqdtlvrqerpirksiedlrntvdsvsrtssstfqyitllknmwkgrqnqvqdnenvvn
eysshlekhqlyidetvknniptklrvlrsilenlrskiqklesdvstqmeycrtpctvt
cnipvvsgkecekiirnegetsemyliqpedsskpyrvycdmktekggwtviqnrqdgsv
dfgrkwdpykqgfgniatnaegkkycgvpgeywlgndrisqltnmgptklliemedwkgd
kvtalyegftvqneankyqlsvskykgtagnaliegasqlvgenrtmtihnsmffstydr
dndgwkttdprkqcskedgggwwynrchaanpngryywggaytwdmakhgtddgvvwmnw
qgswysmkkmskmirpyfpe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1deqF (F:)
yvatrdnccilderfgsycpttcgiadflnnyqtsvdkdlrtlegilyqvenktsearel
vkaiqisynpdqpskpnniesatknsksmmeeimkyetlisthestirflqeiynsnsqk
ivnlrdkvvqleancqepcqdtvkihdvtgrdcqdvankgakesglyfirplkakqqflv
yceidgsgngwtvfqkrldgsldfkknwiqykegfghlsptgntefwlgnekihlistqs
tipyvlriqledwngrtstadyasfkvtgendkyrltyayfiggdagdafdgydfgddss
dkfftshngmqfstwdsdndkydgncaeqdgsgwwmnkchaghlngvyyqggtysktstp
ngydngiiwatwksrwysmkkttmkiiplnrlaigegqqhqlggakqagdv

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqF (F:)
dflnnyqtsvdkdlrtlegilyqvenktsearelvkaiqisynpdqpskpnniesatkns
ksmmeeimkyetlisthestirflqeiynsnsqkivnlrdkvvqleancqepcqdtvkih
dvtgrdcqdvankgakesglyfirplkakqqflvyceidgsgngwtvfqkrldgsldfkk
nwiqykegfghlsptgntefwlgnekihlistqstipyvlriqledwngrtstadyasfk
vtgendkyrltyayfiggdagdafdgydfgddssdkfftshngmqfstwdsdndkydgnc
aeqdgsgwwmnkchaghlngvyyqggtysktstpngydngiiwatwksrwysmkkttmki
iplnrlaige

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deqM (M:)
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  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1deqN (N:)
edgsdppsgdfltegggvrgprlverqqsacketgwpfcsdedwntkcpsgcrmkglide
vdqdftsrinklrdslfnyqknskdsntltknivelmrgdfakannndntfkqinedlrs
rieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsckgscsralehkvdled
yknqqkqleqviainllpsrdiqylpilkmstitgpvprefksqlqeaplewkallemqq
tkmvletfggdghargdsvsqgtglapgsprkpgtssignvnpgsygpgssgtwnpgrpe
pgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwn
tgssgsssfrpdssghgnirpsspdwgtfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqN (N:)
ntkcpsgcrmkglidevdqdftsrinklrdslfnyqknskdsntltknivelmrgdfaka
nnndntfkqinedlrsrieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsc
kgscsralehkvdledyknqqkqleqviainllpsrdiqylpilkmstitgpvprefksq

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1deqO (O:)
kverkppdadgclhadpdlgvlcptgcklqdtlvrqerpirksiedlrntvdsvsrtsss
tfqyitllknmwkgrqnqvqdnenvvneysshlekhqlyidetvknniptklrvlrsile
nlrskiqklesdvstqmeycrtpctvtcnipvvsgkecekiirnegetsemyliqpedss
kpyrvycdmktekggwtviqnrqdgsvdfgrkwdpykqgfgniatnaegkkycgvpgeyw
lgndrisqltnmgptklliemedwkgdkvtalyegftvqneankyqlsvskykgtagnal
iegasqlvgenrtmtihnsmffstydrdndgwkttdprkqcskedgggwwynrchaanpn
gryywggaytwdmakhgtddgvvwmnwqgswysmkkmskmirpyfpeq

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqO (O:)
klqdtlvrqerpirksiedlrntvdsvsrtssstfqyitllknmwkgrqnqvqdnenvvn
eysshlekhqlyidetvknniptklrvlrsilenlrskiqklesdvstqmeycrtpctvt
cnipvvsgkecekiirnegetsemyliqpedsskpyrvycdmktekggwtviqnrqdgsv
dfgrkwdpykqgfgniatnaegkkycgvpgeywlgndrisqltnmgptklliemedwkgd
kvtalyegftvqneankyqlsvskykgtagnaliegasqlvgenrtmtihnsmffstydr
dndgwkttdprkqcskedgggwwynrchaanpngryywggaytwdmakhgtddgvvwmnw
qgswysmkkmskmirpyfpe

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >1deqP (P:)
yvatrdnccilderfgsycpttcgiadflnnyqtsvdkdlrtlegilyqvenktsearel
vkaiqisynpdqpskpnniesatknsksmmeeimkyetlisthestirflqeiynsnsqk
ivnlrdkvvqleancqepcqdtvkihdvtgrdcqdvankgakesglyfirplkakqqflv
yceidgsgngwtvfqkrldgsldfkknwiqykegfghlsptgntefwlgnekihlistqs
tipyvlriqledwngrtstadyasfkvtgendkyrltyayfiggdagdafdgydfgddss
dkfftshngmqfstwdsdndkydgncaeqdgsgwwmnkchaghlngvyyqggtysktstp
ngydngiiwatwksrwysmkkttmkiiplnrlaigegqqhqlggakqagdv

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqP (P:)
dflnnyqtsvdkdlrtlegilyqvenktsearelvkaiqisynpdqpskpnniesatkns
ksmmeeimkyetlisthestirflqeiynsnsqkivnlrdkvvqleancqepcqdtvkih
dvtgrdcqdvankgakesglyfirplkakqqflvyceidgsgngwtvfqkrldgsldfkk
nwiqykegfghlsptgntefwlgnekihlistqstipyvlriqledwngrtstadyasfk
vtgendkyrltyayfiggdagdafdgydfgddssdkfftshngmqfstwdsdndkydgnc
aeqdgsgwwmnkchaghlngvyyqggtysktstpngydngiiwatwksrwysmkkttmki
iplnrlaige

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >1deqQ (Q:)
edgsdppsgdfltegggvrgprlverqqsacketgwpfcsdedwntkcpsgcrmkglide
vdqdftsrinklrdslfnyqknskdsntltknivelmrgdfakannndntfkqinedlrs
rieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsckgscsralehkvdled
yknqqkqleqviainllpsrdiqylpilkmstitgpvprefksqlqeaplewkallemqq
tkmvletfggdghargdsvsqgtglapgsprkpgtssignvnpgsygpgssgtwnpgrpe
pgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwnpgrpepgsagtwn
tgssgsssfrpdssghgnirpsspdwgtfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqQ (Q:)
ntkcpsgcrmkglidevdqdftsrinklrdslfnyqknskdsntltknivelmrgdfaka
nnndntfkqinedlrsrieilrrkvieqvqrinllqknvrdqlvdmkrlevdidikirsc
kgscsralehkvdledyknqqkqleqviainllpsrdiqylpilkmstitgpvprefksq

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1deqR (R:)
kverkppdadgclhadpdlgvlcptgcklqdtlvrqerpirksiedlrntvdsvsrtsss
tfqyitllknmwkgrqnqvqdnenvvneysshlekhqlyidetvknniptklrvlrsile
nlrskiqklesdvstqmeycrtpctvtcnipvvsgkecekiirnegetsemyliqpedss
kpyrvycdmktekggwtviqnrqdgsvdfgrkwdpykqgfgniatnaegkkycgvpgeyw
lgndrisqltnmgptklliemedwkgdkvtalyegftvqneankyqlsvskykgtagnal
iegasqlvgenrtmtihnsmffstydrdndgwkttdprkqcskedgggwwynrchaanpn
gryywggaytwdmakhgtddgvvwmnwqgswysmkkmskmirpyfpeq

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqR (R:)
klqdtlvrqerpirksiedlrntvdsvsrtssstfqyitllknmwkgrqnqvqdnenvvn
eysshlekhqlyidetvknniptklrvlrsilenlrskiqklesdvstqmeycrtpctvt
cnipvvsgkecekiirnegetsemyliqpedsskpyrvycdmktekggwtviqnrqdgsv
dfgrkwdpykqgfgniatnaegkkycgvpgeywlgndrisqltnmgptklliemedwkgd
kvtalyegftvqneankyqlsvskykgtagnaliegasqlvgenrtmtihnsmffstydr
dndgwkttdprkqcskedgggwwynrchaanpngryywggaytwdmakhgtddgvvwmnw
qgswysmkkmskmirpyfpe

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1deqS (S:)
yvatrdnccilderfgsycpttcgiadflnnyqtsvdkdlrtlegilyqvenktsearel
vkaiqisynpdqpskpnniesatknsksmmeeimkyetlisthestirflqeiynsnsqk
ivnlrdkvvqleancqepcqdtvkihdvtgrdcqdvankgakesglyfirplkakqqflv
yceidgsgngwtvfqkrldgsldfkknwiqykegfghlsptgntefwlgnekihlistqs
tipyvlriqledwngrtstadyasfkvtgendkyrltyayfiggdagdafdgydfgddss
dkfftshngmqfstwdsdndkydgncaeqdgsgwwmnkchaghlngvyyqggtysktstp
ngydngiiwatwksrwysmkkttmkiiplnrlaigegqqhqlggakqagdv

    Sequence, based on observed residues (ATOM records): (download) 
    >1deqS (S:)
dflnnyqtsvdkdlrtlegilyqvenktsearelvkaiqisynpdqpskpnniesatkns
ksmmeeimkyetlisthestirflqeiynsnsqkivnlrdkvvqleancqepcqdtvkih
dvtgrdcqdvankgakesglyfirplkakqqflvyceidgsgngwtvfqkrldgsldfkk
nwiqykegfghlsptgntefwlgnekihlistqstipyvlriqledwngrtstadyasfk
vtgendkyrltyayfiggdagdafdgydfgddssdkfftshngmqfstwdsdndkydgnc
aeqdgsgwwmnkchaghlngvyyqggtysktstpngydngiiwatwksrwysmkkttmki
iplnrlaige

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deqZ (Z:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx