PDB entry 1dee

View 1dee on RCSB PDB site
Description: crystal structure at 2.7a resolution of a complex between a staphylococcus aureus domain and a fab fragment of a human igm antibody
Class: immune system
Keywords: fab-ibp complex crystal structure 2.7a resolution binding outside the antigen combining site superantigen fab vh3 specificity
Deposited on 1999-11-15, released 2000-05-24
The last revision prior to the SCOP 1.75 freeze date was dated 2000-06-14, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.217
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: igm rf 2a2
    Species: HOMO SAPIENS
    Domains in SCOP 1.75: d1deea1, d1deea2
  • Chain 'B':
    Compound: igm rf 2a2
    Species: HOMO SAPIENS
    Domains in SCOP 1.75: d1deeb1, d1deeb2
  • Chain 'C':
    Compound: igm rf 2a2
    Species: HOMO SAPIENS
    Domains in SCOP 1.75: d1deec1, d1deec2
  • Chain 'D':
    Compound: igm rf 2a2
    Species: HOMO SAPIENS
    Domains in SCOP 1.75: d1deed1, d1deed2
  • Chain 'E':
    Compound: igm rf 2a2
    Species: HOMO SAPIENS
    Domains in SCOP 1.75: d1deee1, d1deee2
  • Chain 'F':
    Compound: igm rf 2a2
    Species: HOMO SAPIENS
    Domains in SCOP 1.75: d1deef1, d1deef2
  • Chain 'G':
    Compound: immunoglobulin g binding protein a
    Species: STAPHYLOCOCCUS AUREUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1deeg_
  • Chain 'H':
    Compound: immunoglobulin g binding protein a
    Species: STAPHYLOCOCCUS AUREUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1deeh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deeA (A:)
diqmtqspsslsasvgdrvtitcrtsqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysaprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deeB (B:)
qvqlvesgggvvqpgkslrlscaasgftfsgygmhwvrqapgkglewvalisydesnkyy
adsvkgrftisrdnskntlylqmnslraedtavyycakvkfydptapndywgqgtlvtvs
sgsasaptlfplvscensnpsstvavgclaqdflpdsitfswkyknnsdisstrgfpsvl
rggkyaatsqvllpskdvaqgtnehvvckvqhpngnkekdvpl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deeC (C:)
diqmtqspsslsasvgdrvtitcrtsqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysaprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deeD (D:)
qvqlvesgggvvqpgkslrlscaasgftfsgygmhwvrqapgkglewvalisydesnkyy
adsvkgrftisrdnskntlylqmnslraedtavyycakvkfydptapndywgqgtlvtvs
sgsasaptlfplvscensnpsstvavgclaqdflpdsitfswkyknnsdisstrgfpsvl
rggkyaatsqvllpskdvaqgtnehvvckvqhpngnkekdvpl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deeE (E:)
diqmtqspsslsasvgdrvtitcrtsqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysaprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deeF (F:)
qvqlvesgggvvqpgkslrlscaasgftfsgygmhwvrqapgkglewvalisydesnkyy
adsvkgrftisrdnskntlylqmnslraedtavyycakvkfydptapndywgqgtlvtvs
sgsasaptlfplvscensnpsstvavgclaqdflpdsitfswkyknnsdisstrgfpsvl
rggkyaatsqvllpskdvaqgtnehvvckvqhpngnkekdvpl

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1deeG (G:)
fnkdqqsafyeilnmpnlneaqrngfiqslkddpsqstnvlgeakklnesqapk

    Sequence, based on observed residues (ATOM records): (download) 
    >1deeG (G:)
dqqsafyeilnmpnlneaqrngfiqslkddpsqstnvlgeakklnesqapk

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1deeH (H:)
fnkdqqsafyeilnmpnlneaqrngfiqslkddpsqstnvlgeakklnesqapk