PDB entry 1dbo

View 1dbo on RCSB PDB site
Description: crystal structure of chondroitinase b
Class: lyase
Keywords: active site, beta-elimination, dematan sulfate, lyase
Deposited on 1999-11-03, released 2000-01-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-09-16, with a file datestamp of 2015-09-11.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: chondroitinase b
    Species: Pedobacter heparinus [TaxId:984]
    Database cross-references and differences (RAF-indexed):
    • GB U27584 (Start-505)
    Domains in SCOPe 2.07: d1dboa_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1dboA (A:)
    mkmlnklagyllpimvllnvapclgqvvasnetlyqvvkevkpgglvqiadgtykdvqli
    vsnsgksglpitikalnpgkvfftgdakvelrgehlilegiwfkdgnraiqawkshgpgl
    vaiygsynritacvfdcfdeansayittsltedgkvpqhcridhcsftdkitfdqvinln
    ntaraikdgsvggpgmyhrvdhcffsnpqkpgnagggirigyyrndigrclvdsnlfmrq
    dseaeiitsksqenvyygntylncqgtmnfrhgdhqvainnfyigndqrfgyggmfvwgs
    rhviacnyfelsetiksrgnaalylnpgamasehalafdmliannafinvngyaihfnpl
    derrkeycaanrlkfetphqlmlkgnlffkdkpyvypffkddyfiagknswtgnvalgve
    kgipvnisanrsaykpvkikdiqpiegialdlnaliskgitgkplswdevrpywlkempg
    tyaltarlsadraakfkavikrnkeh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1dboA (A:)
    qvvasnetlyqvvkevkpgglvqiadgtykdvqlivsnsgksglpitikalnpgkvfftg
    dakvelrgehlilegiwfkdgnraiqawkshgpglvaiygsynritacvfdcfdeansay
    ittsltedgkvpqhcridhcsftdkitfdqvinlnntaraikdgsvggpgmyhrvdhcff
    snpqkpgnagggirigyyrndigrclvdsnlfmrqdseaeiitsksqenvyygntylncq
    gtmnfrhgdhqvainnfyigndqrfgyggmfvwgsrhviacnyfelsetiksrgnaalyl
    npgamasehalafdmliannafinvngyaihfnplderrkeycaanrlkfetphqlmlkg
    nlffkdkpyvypffkddyfiagknswtgnvalgvekgipvnisanrsaykpvkikdiqpi
    egialdlnaliskgitgkplswdevrpywlkempgtyaltarlsadraakfkavikrnke
    h