PDB entry 1dbo

View 1dbo on RCSB PDB site
Description: crystal structure of chondroitinase b
Class: lyase
Keywords: active site, beta-elimination, dematan sulfate, lyase
Deposited on 1999-11-03, released 2000-01-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: chondroitinase b
    Species: Pedobacter heparinus [TaxId:984]
    Database cross-references and differences (RAF-indexed):
    • GB U27584 (Start-505)
    Domains in SCOPe 2.08: d1dboa_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1dboA (A:)
mkmlnklagyllpimvllnvapclgqvvasnetlyqvvkevkpgglvqiadgtykdvqli
vsnsgksglpitikalnpgkvfftgdakvelrgehlilegiwfkdgnraiqawkshgpgl
vaiygsynritacvfdcfdeansayittsltedgkvpqhcridhcsftdkitfdqvinln
ntaraikdgsvggpgmyhrvdhcffsnpqkpgnagggirigyyrndigrclvdsnlfmrq
dseaeiitsksqenvyygntylncqgtmnfrhgdhqvainnfyigndqrfgyggmfvwgs
rhviacnyfelsetiksrgnaalylnpgamasehalafdmliannafinvngyaihfnpl
derrkeycaanrlkfetphqlmlkgnlffkdkpyvypffkddyfiagknswtgnvalgve
kgipvnisanrsaykpvkikdiqpiegialdlnaliskgitgkplswdevrpywlkempg
tyaltarlsadraakfkavikrnkeh

    Sequence, based on observed residues (ATOM records): (download) 
    >1dboA (A:)
qvvasnetlyqvvkevkpgglvqiadgtykdvqlivsnsgksglpitikalnpgkvfftg
dakvelrgehlilegiwfkdgnraiqawkshgpglvaiygsynritacvfdcfdeansay
ittsltedgkvpqhcridhcsftdkitfdqvinlnntaraikdgsvggpgmyhrvdhcff
snpqkpgnagggirigyyrndigrclvdsnlfmrqdseaeiitsksqenvyygntylncq
gtmnfrhgdhqvainnfyigndqrfgyggmfvwgsrhviacnyfelsetiksrgnaalyl
npgamasehalafdmliannafinvngyaihfnplderrkeycaanrlkfetphqlmlkg
nlffkdkpyvypffkddyfiagknswtgnvalgvekgipvnisanrsaykpvkikdiqpi
egialdlnaliskgitgkplswdevrpywlkempgtyaltarlsadraakfkavikrnke
h