PDB entry 1dbc

View 1dbc on RCSB PDB site
Description: protein-DNA recognition and DNA deformation revealed in crystal structures of cap-DNA complexes
Class: gene regulation/DNA
Keywords: protein-DNA complex, cap, cap-DNA, catabolite gene activator protein, camp receptor protein, crp
Deposited on 1999-11-02, released 2001-11-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2003-04-08, with a file datestamp of 2007-04-25.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.227
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: catabolite gene activator protein
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dbca3, d1dbca4
  • Chain 'B':
    Compound: catabolite gene activator protein
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dbcb3, d1dbcb4
  • Chain 'C':
    Compound: 5'-d(*gp*cp*gp*ap*ap*ap*ap*ap*tp*gp*cp*gp*ap*t)-3'
  • Chain 'D':
    Compound: 5'-d(*cp*tp*ap*gp*ap*tp*cp*gp*cp*ap*tp*tp*tp*tp*tp*cp*g)-3'
  • Chain 'E':
    Compound: 5'-d(*cp*tp*ap*gp*ap*tp*cp*gp*cp*ap*tp*tp*tp*tp*tp*cp*g)-3'
  • Chain 'F':
    Compound: 5'-d(*gp*cp*gp*ap*ap*ap*ap*ap*tp*gp*cp*gp*ap*t)-3'
  • Heterogens: CMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1dbcA (A:)
dptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqg
dfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvt
sekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgril
kmledqnlisahgktivvyg

    Sequence, based on observed residues (ATOM records): (download) 
    >1dbcA (A:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgrilk
mledqnlisahgktivvyg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1dbcB (B:)
dptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqg
dfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvt
sekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgril
kmledqnlisahgktivvyg

    Sequence, based on observed residues (ATOM records): (download) 
    >1dbcB (B:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgrilk
mledqnlisahgktivv

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.