PDB entry 1d6v

View 1d6v on RCSB PDB site
Description: conformation effects in biological catalysis introduced by oxy-cope antibody maturation
Class: immune system
Keywords: immune system
Deposited on 1999-10-15, released 2000-02-09
The last revision prior to the SCOP 1.75 freeze date was dated 2000-10-04, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.224
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: chimeric germline precursor of oxy-cope catalytic antibody az-28 (heavy chain)
    Species: MUS MUSCULUS AND HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01857 (0-119)
      • see remark 999 (31)
      • see remark 999 (56)
      • see remark 999 (58)
      • see remark 999 (73)
    • Uniprot P01857 (120-220)
    Domains in SCOP 1.75: d1d6vh1, d1d6vh2
  • Chain 'L':
    Compound: chimeric germline precursor of oxy-cope catalytic antibody az-28 (light chain)
    Species: MUS MUSCULUS AND HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01834 (0-106)
      • see remark 999 (33)
      • see remark 999 (50)
      • not in sws entry (107)
    • Uniprot P01834 (108-210)
    Domains in SCOP 1.75: d1d6vl1, d1d6vl2
  • Heterogens: CD, HOP, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1d6vH (H:)
    qvqlqqsgaelmkpgasvkisckatgytfssywiewvkqrpghglewigeilpgsgstny
    nekfkgkatftadtssntaymqlssltsedsavyycarghsyyfydgdywgqgtsvtvss
    astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
    glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1d6vL (L:)
    dikmtqspssmyaslgervtitckasqdinsylswfqqkpgkspktliyranrlvdgvps
    rfsgsgsgqdysltissleyedmgiyyclqydefpytfgsgtkleikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnr