PDB entry 1d5z
View 1d5z on RCSB PDB site
Description: x-ray crystal structure of hla-dr4 complexed with peptidomimetic and seb
Class: immune system/peptide inhibitor
Keywords: MHC class II-superantigen complex, immune system-peptide inhibitor complex, peptidomimetic inhibitor
Deposited on
1999-10-12, released
2000-06-28
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.234
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein (hla class II histocompatibility antigen)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1d5za1, d1d5za2 - Chain 'B':
Compound: protein (hla class II histocompatibility antigen)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1d5zb1, d1d5zb2 - Chain 'C':
Compound: protein (enterotoxin type b)
Species: Staphylococcus aureus [TaxId:1280]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1d5zc1, d1d5zc2 - Chain 'D':
Compound: protein (peptidomimetic inhibitor)
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1d5zA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d
Sequence, based on observed residues (ATOM records): (download)
>1d5zA (A:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1d5zB (B:)
gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsl
tspltvewrars
Sequence, based on observed residues (ATOM records): (download)
>1d5zB (B:)
gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypallvcsvngfypgsiev
rwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsltspltvewr
a
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1d5zC (C:)
esqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgn
ydnvrvefknkdladkykdkyvdvfganyyyqcyfskktndinshqtdkrktcmyggvte
hngnqldkyrsitvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnns
pyetgyikfienensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttkkk
Sequence, based on observed residues (ATOM records): (download)
>1d5zC (C:)
sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgny
dnvrvefknkdladkykdkyvdvfganyyyqcyfskkkrktcmyggvtehngnqldkyrs
itvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnnspyetgyikfie
nensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttk
- Chain 'D':
No sequence available.