PDB entry 1d5m
View 1d5m on RCSB PDB site
Description: x-ray crystal structure of hla-dr4 complexed with peptide and seb
Class: immune system/peptide inhibitor
Keywords: MHC class II-superantigen complex, immune system-peptide inhibitor complex, peptidomimetic inhibitor
Deposited on
1999-10-07, released
2000-06-28
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-27, with a file datestamp of
2011-07-22.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.236
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1d5ma1, d1d5ma2 - Chain 'B':
Compound: hla class II histocompatibility antigen
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1d5mb1, d1d5mb2 - Chain 'C':
Compound: enterotoxin type b
Species: Staphylococcus aureus [TaxId:1280]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1d5mc1, d1d5mc2 - Chain 'D':
Compound: inhibitor
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1d5mA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d
Sequence, based on observed residues (ATOM records): (download)
>1d5mA (A:)
ehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalani
avdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwlr
ngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1d5mB (B:)
gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewrars
Sequence, based on observed residues (ATOM records): (download)
>1d5mB (B:)
dtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeyw
nsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypanllvcsvngfypgsiev
rwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtspltvewr
a
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1d5mC (C:)
esqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgn
ydnvrvefknkdladkykdkyvdvfganyyyqcyfskktndinshqtdkrktcmyggvte
hngnqldkyrsitvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnns
pyetgyikfienensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttkkk
Sequence, based on observed residues (ATOM records): (download)
>1d5mC (C:)
sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgny
dnvrvefknkdladkykdkyvdvfganyyyqcyfskkkrktcmyggvtehngnqldkyrs
itvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnnspyetgyikfie
nensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttk
- Chain 'D':
No sequence available.