PDB entry 1d5b

View 1d5b on RCSB PDB site
Description: unliganded mature oxy-cope catalytic antibody
Class: immune system
Keywords: immune system
Deposited on 1999-10-06, released 2000-02-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-06-21, with a file datestamp of 2017-06-16.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain)
    Species: , [TaxId:9606]
    Gene: IGKC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7TS98 (0-106)
      • conflict (33)
      • conflict (50)
      • conflict (95)
      • conflict (99)
    • Uniprot P01834 (107-210)
    Domains in SCOPe 2.08: d1d5ba1, d1d5ba2
  • Chain 'B':
    Compound: chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain)
    Species: , [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K7T9I5 (8-119)
      • expression tag (0-7)
      • conflict (31)
      • conflict (56)
      • conflict (58)
      • conflict (73)
      • conflict (98-103)
      • conflict (103)
      • conflict (103)
    • Uniprot P0DOX5 (120-220)
    Domains in SCOPe 2.08: d1d5bb1, d1d5bb2, d1d5bb3
  • Chain 'H':
    Compound: chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain)
    Species: , [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K7T9I5 (8-119)
      • expression tag (0-7)
      • conflict (31)
      • conflict (56)
      • conflict (58)
      • conflict (73)
      • conflict (98-103)
      • conflict (103)
      • conflict (103)
    • Uniprot P0DOX5 (120-220)
    Domains in SCOPe 2.08: d1d5bh1, d1d5bh2, d1d5bh3
  • Chain 'L':
    Compound: chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain)
    Species: , [TaxId:9606]
    Gene: IGKC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7TS98 (0-106)
      • conflict (33)
      • conflict (50)
      • conflict (95)
      • conflict (99)
    • Uniprot P01834 (107-210)
    Domains in SCOPe 2.08: d1d5bl1, d1d5bl2
  • Heterogens: CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1d5bA (A:)
dikmtqspssmyaslgervtitckasqdinsylnwfqqkpgkspktliyrtnrlvdgvps
rfsgsgsgqdysltissleyedmgiyyclqydefpytfgsgtkleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1d5bB (B:)
qvqlqqsgaelmkpgasvkisckatgytfssfwiewvkqrpghglewigeilpgsggthy
nekfkgkatftadkssntaymqlssltsedsavyycarghsyyfydgdywgqgtsvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1d5bH (H:)
qvqlqqsgaelmkpgasvkisckatgytfssfwiewvkqrpghglewigeilpgsggthy
nekfkgkatftadkssntaymqlssltsedsavyycarghsyyfydgdywgqgtsvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1d5bL (L:)
dikmtqspssmyaslgervtitckasqdinsylnwfqqkpgkspktliyrtnrlvdgvps
rfsgsgsgqdysltissleyedmgiyyclqydefpytfgsgtkleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr