PDB entry 1d4m
View 1d4m on RCSB PDB site
Description: the crystal structure of coxsackievirus a9 to 2.9 a resolution
Class: Virus
Keywords: PICORNAVIRUS STRUCTURE, RGD, UNCOATING, VIRUS-RECEPTOR INTERACTION, WIN COMPOUND, VIRUS/VIRAL PROTEIN, Icosahedral virus
Deposited on
1999-10-04, released
1999-12-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.169
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain '1':
Compound: protein (coxsackievirus a9)
Species: Human coxsackievirus A9 [TaxId:12067]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1d4m1_ - Chain '2':
Compound: protein (coxsackievirus a9)
Species: Human coxsackievirus A9 [TaxId:12067]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1d4m.1 - Chain '3':
Compound: protein (coxsackievirus a9)
Species: Human coxsackievirus A9 [TaxId:12067]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1d4m3_ - Chain '4':
Compound: protein (coxsackievirus a9)
Species: Human coxsackievirus A9 [TaxId:12067]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1d4m.1 - Heterogens: MYR, W71, HOH
PDB Chain Sequences:
- Chain '1':
Sequence, based on SEQRES records: (download)
>1d4m1 (1:)
gdveeaieravvhvadtmrsgpsnsasvpaltavetghtsqvtpsdtmqtrhvknyhsrs
estvenflgrsacvymeeykttdndvnkkfvawpintkqmvqmrrklemftylrfdmevt
fvitsrqdpgttlaqdmpvlthqimyvppggpipakvddyawqtstnpsifwtegnapar
msipfisignaysnfydgwsnfdqrgsygyntlnnlghiyvrhvsgssphpitstirvyf
kpkhtrawvprpprlcqykkafsvdftptpitdtrkdintvttvaqsrrrgdmstlnth
Sequence, based on observed residues (ATOM records): (download)
>1d4m1 (1:)
gdveeaieravvhvadtmrsgpsnsasvpaltavetghtsqvtpsdtmqtrhvknyhsrs
estvenflgrsacvymeeykttdndvnkkfvawpintkqmvqmrrklemftylrfdmevt
fvitsrqdpgttlaqdmpvlthqimyvppggpipakvddyawqtstnpsifwtegnapar
msipfisignaysnfydgwsnfdqrgsygyntlnnlghiyvrhvsgssphpitstirvyf
kpkhtrawvprpprlcqykkafsvdftptpitdtrkdintvttv
- Chain '2':
Sequence, based on SEQRES records: (download)
>1d4m2 (2:)
sptveecgysdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvat
crfytldsikwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqg
cllvvcvpeaemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvg
nltiyphqwinlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvp
itvtvapmcaeynglrlaqaq
Sequence, based on observed residues (ATOM records): (download)
>1d4m2 (2:)
sdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvatcrfytldsi
kwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqgcllvvcvpe
aemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvgnltiyphqw
inlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvpitvtvapmc
aeynglrlaqaq
- Chain '3':
Sequence; same for both SEQRES and ATOM records: (download)
>1d4m3 (3:)
glptmntpgstqfltsddfqspcalpqfdvtpsmnipgevknlmeiaevdsvvpvnnvqd
ttdqmemfripvtinaplqqqvfglrlqpgldsvfkhtllgeilnyyahwsgsmkltfvf
cgsamatgkfliaysppganppktrkdamlgthiiwdiglqsscvlcvpwisqthyrlvq
qdeytsagyvtcwyqtgmivppgtpnsssimcfasacndfsvrmlrdtpfisqdnklq
- Chain '4':
Sequence, based on SEQRES records: (download)
>1d4m4 (4:)
gaqvstqktgahetslsaagnsiihytninyykdaasnsanrqdftqdpskftepvkdvm
ikslpaln
Sequence, based on observed residues (ATOM records): (download)
>1d4m4 (4:)
gaqvstqktgahetsiihytninyykdaasnsanrqdftqdpskftepvkdvmikslpal
n