PDB entry 1d4m

View 1d4m on RCSB PDB site
Description: the crystal structure of coxsackievirus a9 to 2.9 a resolution
Class: Virus
Keywords: PICORNAVIRUS STRUCTURE, RGD, UNCOATING, VIRUS-RECEPTOR INTERACTION, WIN COMPOUND, VIRUS/VIRAL PROTEIN, Icosahedral virus
Deposited on 1999-10-04, released 1999-12-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.169
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m1_
  • Chain '2':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m.1
  • Chain '3':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m3_
  • Chain '4':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m.1
  • Heterogens: MYR, W71, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download)
    >1d4m1 (1:)
    gdveeaieravvhvadtmrsgpsnsasvpaltavetghtsqvtpsdtmqtrhvknyhsrs
    estvenflgrsacvymeeykttdndvnkkfvawpintkqmvqmrrklemftylrfdmevt
    fvitsrqdpgttlaqdmpvlthqimyvppggpipakvddyawqtstnpsifwtegnapar
    msipfisignaysnfydgwsnfdqrgsygyntlnnlghiyvrhvsgssphpitstirvyf
    kpkhtrawvprpprlcqykkafsvdftptpitdtrkdintvttvaqsrrrgdmstlnth
    

    Sequence, based on observed residues (ATOM records): (download)
    >1d4m1 (1:)
    gdveeaieravvhvadtmrsgpsnsasvpaltavetghtsqvtpsdtmqtrhvknyhsrs
    estvenflgrsacvymeeykttdndvnkkfvawpintkqmvqmrrklemftylrfdmevt
    fvitsrqdpgttlaqdmpvlthqimyvppggpipakvddyawqtstnpsifwtegnapar
    msipfisignaysnfydgwsnfdqrgsygyntlnnlghiyvrhvsgssphpitstirvyf
    kpkhtrawvprpprlcqykkafsvdftptpitdtrkdintvttv
    

  • Chain '2':
    Sequence, based on SEQRES records: (download)
    >1d4m2 (2:)
    sptveecgysdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvat
    crfytldsikwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqg
    cllvvcvpeaemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvg
    nltiyphqwinlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvp
    itvtvapmcaeynglrlaqaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >1d4m2 (2:)
    sdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvatcrfytldsi
    kwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqgcllvvcvpe
    aemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvgnltiyphqw
    inlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvpitvtvapmc
    aeynglrlaqaq
    

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1d4m3 (3:)
    glptmntpgstqfltsddfqspcalpqfdvtpsmnipgevknlmeiaevdsvvpvnnvqd
    ttdqmemfripvtinaplqqqvfglrlqpgldsvfkhtllgeilnyyahwsgsmkltfvf
    cgsamatgkfliaysppganppktrkdamlgthiiwdiglqsscvlcvpwisqthyrlvq
    qdeytsagyvtcwyqtgmivppgtpnsssimcfasacndfsvrmlrdtpfisqdnklq
    

  • Chain '4':
    Sequence, based on SEQRES records: (download)
    >1d4m4 (4:)
    gaqvstqktgahetslsaagnsiihytninyykdaasnsanrqdftqdpskftepvkdvm
    ikslpaln
    

    Sequence, based on observed residues (ATOM records): (download)
    >1d4m4 (4:)
    gaqvstqktgahetsiihytninyykdaasnsanrqdftqdpskftepvkdvmikslpal
    n