PDB entry 1d4m

View 1d4m on RCSB PDB site
Description: the crystal structure of coxsackievirus a9 to 2.9 a resolution
Class: Virus
Keywords: PICORNAVIRUS STRUCTURE, RGD, UNCOATING, VIRUS-RECEPTOR INTERACTION, WIN COMPOUND, VIRUS/VIRAL PROTEIN, Icosahedral virus
Deposited on 1999-10-04, released 1999-12-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.169
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m1_
  • Chain '2':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m.1
  • Chain '3':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m3_
  • Chain '4':
    Compound: protein (coxsackievirus a9)
    Species: Human coxsackievirus A9 [TaxId:12067]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d4m.1
  • Heterogens: MYR, W71, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1d4m1 (1:)
gdveeaieravvhvadtmrsgpsnsasvpaltavetghtsqvtpsdtmqtrhvknyhsrs
estvenflgrsacvymeeykttdndvnkkfvawpintkqmvqmrrklemftylrfdmevt
fvitsrqdpgttlaqdmpvlthqimyvppggpipakvddyawqtstnpsifwtegnapar
msipfisignaysnfydgwsnfdqrgsygyntlnnlghiyvrhvsgssphpitstirvyf
kpkhtrawvprpprlcqykkafsvdftptpitdtrkdintvttvaqsrrrgdmstlnth

    Sequence, based on observed residues (ATOM records): (download) 
    >1d4m1 (1:)
gdveeaieravvhvadtmrsgpsnsasvpaltavetghtsqvtpsdtmqtrhvknyhsrs
estvenflgrsacvymeeykttdndvnkkfvawpintkqmvqmrrklemftylrfdmevt
fvitsrqdpgttlaqdmpvlthqimyvppggpipakvddyawqtstnpsifwtegnapar
msipfisignaysnfydgwsnfdqrgsygyntlnnlghiyvrhvsgssphpitstirvyf
kpkhtrawvprpprlcqykkafsvdftptpitdtrkdintvttv

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1d4m2 (2:)
sptveecgysdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvat
crfytldsikwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqg
cllvvcvpeaemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvg
nltiyphqwinlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvp
itvtvapmcaeynglrlaqaq

    Sequence, based on observed residues (ATOM records): (download) 
    >1d4m2 (2:)
sdrvrsitlgnstittqecanvvvgygrwptylrddeataedqptqpdvatcrfytldsi
kwekgsvgwwwkfpealsdmglfgqnmqyhylgragytihvqcnaskfhqgcllvvcvpe
aemggavvgqafsatamangdkayeftsatqsdqtkvqtaihnagmgvgvgnltiyphqw
inlrtnnsativmpyinsvpmdnmfrhynftlmvipfvkldyadtastyvpitvtvapmc
aeynglrlaqaq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1d4m3 (3:)
glptmntpgstqfltsddfqspcalpqfdvtpsmnipgevknlmeiaevdsvvpvnnvqd
ttdqmemfripvtinaplqqqvfglrlqpgldsvfkhtllgeilnyyahwsgsmkltfvf
cgsamatgkfliaysppganppktrkdamlgthiiwdiglqsscvlcvpwisqthyrlvq
qdeytsagyvtcwyqtgmivppgtpnsssimcfasacndfsvrmlrdtpfisqdnklq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1d4m4 (4:)
gaqvstqktgahetslsaagnsiihytninyykdaasnsanrqdftqdpskftepvkdvm
ikslpaln

    Sequence, based on observed residues (ATOM records): (download) 
    >1d4m4 (4:)
gaqvstqktgahetsiihytninyykdaasnsanrqdftqdpskftepvkdvmikslpal
n