PDB entry 1d3i

View 1d3i on RCSB PDB site
Description: cryo-em structure of human rhinovirus 14 (hrv14) complexed with a two-domain fragment of its cellular receptor, intercellular adhesion molecule-1 (d1d2-icam-1). implications for virus-receptor interactions. alpha carbons only
Class: Virus/Receptor
Keywords: HUMAN RHINOVIRUS, HRV14, ICAM-1, FITTING OF X-RAY STRUCTURES INTO CRYO-EM RECONSTRUCTIONS, COMMON COLD, VIRUS UNCOATING, VIRUS/ VIRAL PROTEIN, RHINOVIRUS-RECEPTOR COMPLEX, Icosahedral virus, Virus-Receptor COMPLEX
Deposited on 1999-09-29, released 2000-01-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein (rhinovirus 14 coat protein vp1)
    Species: Human rhinovirus sp. [TaxId:169066]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d3i1_
  • Chain '2':
    Compound: protein (rhinovirus 14 coat protein vp2)
    Species: Human rhinovirus sp. [TaxId:169066]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d3i2_
  • Chain '3':
    Compound: protein (rhinovirus 14 coat protein vp3)
    Species: Human rhinovirus sp. [TaxId:169066]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d3i3_
  • Chain '4':
    Compound: protein (rhinovirus 14 coat protein vp4)
    Species: Human rhinovirus sp. [TaxId:169066]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d3i4_
  • Chain 'I':
    Compound: protein (intercellular adhesion molecule-1)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1d3ii_

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1d3i1 (1:)
glgdeleevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhf
ngsetdvecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelft
yvrfdseytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkv
gdtsrfsvpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvk
irvyhrakhveawiprapralpytsigrtnypkntepvikkrkgdiksy

    Sequence, based on observed residues (ATOM records): (download) 
    >1d3i1 (1:)
tvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhfngsetdvecflgraac
vhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelftyvrfdseytilatasq
pdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkvgdtsrfsvpyvglasa
yncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvkirvyhrakhveawipr
apralpytsigrtnypkntepvikkrkgdiksy

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1d3i2 (2:)
spnveacgysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsv
crfytldsktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsg
cllvvvipehqlasheggnvsvkytfthpgergidlssanevggpvkdvlynmngtllgn
llifphqfinlrtnntativipyinsvpidsmtrhnnvslmvipiapltvptgatpslpi
tvtiapmctefsgirsksivpq

    Sequence, based on observed residues (ATOM records): (download) 
    >1d3i2 (2:)
gysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsvcrfytld
sktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsgcllvvvi
pehqlasheggnvsvkytfthpgergidlssanevggpvkdvlynmngtllgnllifphq
finlrtnntativipyinsvpidsmtrhnnvslmvipiapltvptgatpslpitvtiapm
ctefsgirsksivpq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1d3i3 (3:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1d3i4 (4:)
gaqvstqksgshenqniltngsnqtftvinyykdaastssagqslsmdpskftepvkdlm
lkgapaln

    Sequence, based on observed residues (ATOM records): (download) 
    >1d3i4 (4:)
inyykdaastssagqslsmdpskftepvkdlmlkgapaln

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1d3iI (I:)
qtsvspskvilprggsvlvtcstscdqpkllgietplpkkelllpgnnrkvyelsnvqed
sqpmcysncpdgqstaktfltvywtpervelaplpswqpvgknltlrcqveggapranlt
vvllrgekelkrepavgepaevtttvlvrrdhhganfscrteldlrpqglelfentsapy
qlqtf