PDB entry 1cfn

View 1cfn on RCSB PDB site
Description: anti-p24 (hiv-1) fab fragment cb41 complexed with an epitope-related peptide
Class: polyspecificity
Keywords: polyspecificity, cross reactivity, fab-fragment, hiv-1
Deposited on 1999-03-19, released 1999-03-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-06-24, with a file datestamp of 2020-06-19.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (igg2a kappa antibody cb41 (light chain))
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1CFN (0-213)
    Domains in SCOPe 2.08: d1cfna1, d1cfna2
  • Chain 'B':
    Compound: protein (igg2a-kappa antibody cb41 (heavy chain))
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1CFN (0-212)
    Domains in SCOPe 2.08: d1cfnb1, d1cfnb2
  • Chain 'C':
    Compound: protein (bound peptide)
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 1CFN (0-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cfnA (A:)
dikmtqspssmytslgervtitckasqdinsfltwflqkpgkspktliyranrlmigvps
rfsgsgsgqtysltissleyedmgiyyclqyddfpltfgagtkldlkradaaptvsifpp
sseqltsggasvvcflnnfypkeinvkwkidgserqngvldswteqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cfnB (B:)
qdqlqqsgaelvrpgasvklsckalgyiftdyeihwvkqtpvhglewiggihpgssgtay
nqkfkgkatltadkssttafmelssltsedsavyyctrkdywgqgtlvtvsaakttapsv
yplvpvcggttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpallqsglytlsssv
tvtsntwpsqtitcnvahpasstkvdkkieprv

  • Chain 'C':
    No sequence available.