PDB entry 1cd3

View 1cd3 on RCSB PDB site
Description: procapsid of bacteriophage phix174
Class: Virus
Keywords: COMPLEX (VIRUS CAPSID PROTEINS), BACTERIOPHAGE, PROCAPSID, SCAFFOLDING PROTEIN, CHAPERONE, Icosahedral virus
Deposited on 1999-03-05, released 1999-04-01
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.275
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein (scaffolding protein gpd)
    Species: Enterobacteria phage phiX174 [TaxId:10847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1cd31_
  • Chain '2':
    Compound: protein (scaffolding protein gpd)
    Species: Enterobacteria phage phiX174 [TaxId:10847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1cd32_
  • Chain '3':
    Compound: protein (scaffolding protein gpd)
    Species: Enterobacteria phage phiX174 [TaxId:10847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1cd33_
  • Chain '4':
    Compound: protein (scaffolding protein gpd)
    Species: Enterobacteria phage phiX174 [TaxId:10847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1cd34_
  • Chain 'B':
    Compound: protein (scaffolding protein gpb)
    Species: Enterobacteria phage phiX174 [TaxId:10847]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: protein (capsid protein gpf)
    Species: Enterobacteria phage phiX174 [TaxId:10847]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03641 (0-425)
      • conflict (215)
    Domains in SCOPe 2.05: d1cd3f_
  • Chain 'G':
    Compound: protein (spike protein gpg)
    Species: Enterobacteria phage phiX174 [TaxId:10847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1cd3g_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1cd31 (1:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1cd31 (1:)
eqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldf
vgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftl
rvragntdvltdaeenvrqklra

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1cd32 (2:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1cd32 (2:)
eqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldf
vgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftl
rvragntdvltdaee

  • Chain '3':
    Sequence, based on SEQRES records: (download) 
    >1cd33 (3:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1cd33 (3:)
teqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtld
fvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaft
lrvragntdvltdaeenvrq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1cd34 (4:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1cd34 (4:)
qsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldfv
gyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftlr
vragntdvltdaeenvrqklraegvm

  • Chain 'B':
    No sequence available.

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cd3F (F:)
sniqtgaermphdlshlgflagqigrlitisttpviagdsfemdavgalrlsplrrglai
dstvdiftfyvphrhvygeqwikfmkdgvnatplptvnttgyidhaaflgtinpdtnkip
khlfqgylniynnyfkapwmpdrteanpnelnqddarfgfrcchlkniwtaplppetels
rqmttsttsidimglqaayanlhtdqerdyfmqryrdvissfggktsydadnrpllvmrs
nlwasgydvdgtdqtslgqfsgrvqqtykhsvprffvpehgtmftlalvrfpptatkeiq
ylnakgaltytdiagdpvlygnlppreismkdvfrsgdsskkfkiaegqwyryapsyvsp
ayhllegfpfiqeppsgdlqervlirhhdydqcfqsvqllqwnsqvkfnvtvyrnlpttr
dsimts

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cd3G (G:)
mfqtfisrhnsnffsdklvltsvtpassapvlqtpkatsstlyfdsltvnagnggflhci
qmdtsvnaanqvvsvgadiafdadpkffaclvrfesssvpttlptaydvyplngrhdggy
ytvkdcvtidvlprtpgnnvyvgfmvwsnftatkcrglvslnqvikeiiclqplk