PDB entry 1cd3
View 1cd3 on RCSB PDB site
Description: procapsid of bacteriophage phix174
Class: virus
Keywords: COMPLEX (VIRUS CAPSID PROTEINS), BACTERIOPHAGE, PROCAPSID, SCAFFOLDING PROTEIN, CHAPERONE, Icosahedral virus, Virus
Deposited on
1999-03-05, released
1999-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-11-06, with a file datestamp of
2019-11-01.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.06
(click here for full SPACI score report)
Chains and heterogens:
- Chain '1':
Compound: protein (scaffolding protein gpd)
Species: Enterobacteria phage phiX174 [TaxId:10847]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1cd31_ - Chain '2':
Compound: protein (scaffolding protein gpd)
Species: Enterobacteria phage phiX174 [TaxId:10847]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1cd32_ - Chain '3':
Compound: protein (scaffolding protein gpd)
Species: Enterobacteria phage phiX174 [TaxId:10847]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1cd33_ - Chain '4':
Compound: protein (scaffolding protein gpd)
Species: Enterobacteria phage phiX174 [TaxId:10847]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1cd34_ - Chain 'B':
Compound: protein (scaffolding protein gpb)
Species: Enterobacteria phage phiX174 [TaxId:10847]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: protein (capsid protein gpf)
Species: Enterobacteria phage phiX174 [TaxId:10847]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1cd3f_ - Chain 'G':
Compound: protein (spike protein gpg)
Species: Enterobacteria phage phiX174 [TaxId:10847]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1cd3g_ - Heterogens: HOH
PDB Chain Sequences:
- Chain '1':
Sequence, based on SEQRES records: (download)
>1cd31 (1:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm
Sequence, based on observed residues (ATOM records): (download)
>1cd31 (1:)
eqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldf
vgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftl
rvragntdvltdaeenvrqklra
- Chain '2':
Sequence, based on SEQRES records: (download)
>1cd32 (2:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm
Sequence, based on observed residues (ATOM records): (download)
>1cd32 (2:)
eqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldf
vgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftl
rvragntdvltdaee
- Chain '3':
Sequence, based on SEQRES records: (download)
>1cd33 (3:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm
Sequence, based on observed residues (ATOM records): (download)
>1cd33 (3:)
teqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtld
fvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaft
lrvragntdvltdaeenvrq
- Chain '4':
Sequence, based on SEQRES records: (download)
>1cd34 (4:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm
Sequence, based on observed residues (ATOM records): (download)
>1cd34 (4:)
qsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldfv
gyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftlr
vragntdvltdaeenvrqklraegvm
- Chain 'B':
No sequence available.
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1cd3F (F:)
sniqtgaermphdlshlgflagqigrlitisttpviagdsfemdavgalrlsplrrglai
dstvdiftfyvphrhvygeqwikfmkdgvnatplptvnttgyidhaaflgtinpdtnkip
khlfqgylniynnyfkapwmpdrteanpnelnqddarfgfrcchlkniwtaplppetels
rqmttsttsidimglqaayanlhtdqerdyfmqryrdvissfggktsydadnrpllvmrs
nlwasgydvdgtdqtslgqfsgrvqqtykhsvprffvpehgtmftlalvrfpptatkeiq
ylnakgaltytdiagdpvlygnlppreismkdvfrsgdsskkfkiaegqwyryapsyvsp
ayhllegfpfiqeppsgdlqervlirhhdydqcfqsvqllqwnsqvkfnvtvyrnlpttr
dsimts
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>1cd3G (G:)
mfqtfisrhnsnffsdklvltsvtpassapvlqtpkatsstlyfdsltvnagnggflhci
qmdtsvnaanqvvsvgadiafdadpkffaclvrfesssvpttlptaydvyplngrhdggy
ytvkdcvtidvlprtpgnnvyvgfmvwsnftatkcrglvslnqvikeiiclqplk