PDB entry 1cbv

View 1cbv on RCSB PDB site
Description: an autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded fab and a deoxynucleotide-fab complex
Class: immune system/DNA
Keywords: protein-DNA complex, single strand, immune system-DNA complex
Deposited on 1993-03-16, released 1994-01-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-29, with a file datestamp of 2017-11-24.
Experiment type: XRAY
Resolution: 2.66 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'D':
    Compound: DNA (5'-d(*tp*tp*t)-3')
  • Chain 'H':
    Compound: protein (fab (bv04-01) autoantibody-heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1CBV (0-218)
    Domains in SCOPe 2.08: d1cbvh1, d1cbvh2
  • Chain 'L':
    Compound: protein (fab (bv04-01) autoantibody-light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1CBV (0-218)
    Domains in SCOPe 2.08: d1cbvl1, d1cbvl2

PDB Chain Sequences:

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cbvH (H:)
evqpvetggglvqpkgslklscaasgfsfntnamnwvrqapgkglewvarirsksnnyat
yyadsvkdrftisrddsqnmlylqmnnlktedtamyycvrdqtgtawfaywgqgtlvtvs
aakttppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpallqs
glytmsssvtvpsstwpsqtvtcsvahpassttvdkkle

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cbvL (L:)
dvvmtqtplslpvslgdqasiscrssqslvhsngntylhwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyfcsqsthvpltfgagtklelkradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec