PDB entry 1c8h

View 1c8h on RCSB PDB site
Description: canine parvovirus strain d empty capsid structure at ph 5.5
Class: Virus
Keywords: beta barrel, viral capsid, icosahedral symmetry, Icosahedral virus
Deposited on 2000-05-05, released 2000-08-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.26
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: canine parvovirus capsid
    Species: Canine parvovirus [TaxId:10788]
    Database cross-references and differences (RAF-indexed):
    • GB AAA87185 (Start-583)
      • engineered (385)
    Domains in SCOPe 2.08: d1c8ha_
  • Heterogens: CA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1c8hA (A:)
msdgavqpdggqpavrneratgsgngsgggggggsggvgistgtfnnqtefkflengwve
itanssrlvhlnmpesenyrrvvvnnmdktavngnmalddihaqivtpwslvdanawgvw
fnpgdwqlivntmselhlvsfeqeifnvvlktvsesatqpptkvynndltaslmvaldsn
ntmpftpaamrsetlgfypwkptiptpwryyfqwdrtlipshtgtsgtptniyhgtdpdd
vqfytiensvpvhllrtgdefatgtfffdckpcrlthtwqtnralglppflnslpqsega
tnfgdigvqqdkrrgvtqmgntnyiteatimrpaevgysapyysfeastqgpfktpiaag
rggaqtdenqaadgnpryafgrqhgqkttttgetperftyiahqdtgrypegdwiqninf
nlpvtndnvllptdpiggktginytnifntygpltalnnvppvypngqiwdkefdtdlkp
rlhvnapfvcqnncpgqlfvkvapnltneydpdasanmsrivtysdfwwkgklvfkaklr
ashtwnpiqqmsinvdnqfnyvpsniggmkivyeksqlaprkly

    Sequence, based on observed residues (ATOM records): (download) 
    >1c8hA (A:)
gvgistgtfnnqtefkflengwveitanssrlvhlnmpesenyrrvvvnnmdktavngnm
alddihaqivtpwslvdanawgvwfnpgdwqlivntmselhlvsfeqeifnvvlktvsep
ptkvynndltaslmvaldsnntmpftpaamrsetlgfypwkptiptpwryyfqwdrtlip
shtgtsgtptniyhgtdpddvqfytiensvpvhllrtgdefatgtfffdckpcrlthtwq
tnralglppflnslpqsegatnfgdigvqqdkrrgvtqmgntnyiteatimrpaevgysa
pyysfeastqgpfktpiaagrggaqtdenqaadgnpryafgrqhgqkttttgetperfty
iahqdtgrypegdwiqninfnlpvtndnvllptdpiggktginytnifntygpltalnnv
ppvypngqiwdkefdtdlkprlhvnapfvcqnncpgqlfvkvapnltneydpdasanmsr
ivtysdfwwkgklvfkaklrashtwnpiqqmsinvdnqfnyvpsniggmkivyeksqlap
rkly