PDB entry 1c16

View 1c16 on RCSB PDB site
Description: crystal structure analysis of the gamma/delta t cell ligand t22
Class: immune system
Keywords: non-classical MHC-like, major histocompatibility, beta2-microglobulin
Deposited on 1999-07-20, released 2000-01-26
The last revision prior to the SCOP 1.73 freeze date was dated 2003-10-28, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.284
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC-like protein t22
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOP 1.73: d1c16a1, d1c16a2
  • Chain 'B':
    Compound: protein (beta-2-microglobulin)
    Species: HOMO SAPIENS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1c16b_
  • Chain 'C':
    Compound: MHC-like protein t22
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOP 1.73: d1c16c1, d1c16c2
  • Chain 'D':
    Compound: protein (beta-2-microglobulin)
    Species: HOMO SAPIENS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1c16d_
  • Chain 'E':
    Compound: MHC-like protein t22
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOP 1.73: d1c16e1, d1c16e2
  • Chain 'F':
    Compound: protein (beta-2-microglobulin)
    Species: HOMO SAPIENS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1c16f_
  • Chain 'G':
    Compound: MHC-like protein t22
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOP 1.73: d1c16g1, d1c16g2
  • Chain 'H':
    Compound: protein (beta-2-microglobulin)
    Species: HOMO SAPIENS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1c16h_

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1c16A (A:)
    gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
    trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
    ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
    gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
    ytchvyheglpeplilrwgg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1c16B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1c16C (C:)
    gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
    trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
    ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
    gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
    ytchvyheglpeplilrwgg
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1c16D (D:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1c16E (E:)
    gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
    trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
    ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
    gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
    ytchvyheglpeplilrwgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1c16E (E:)
    gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
    trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
    ptlnenpssctphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpegdvtlr
    cwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqsytchvy
    heglpeplilrwgg
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1c16F (F:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1c16G (G:)
    gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
    trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
    ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
    gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
    ytchvyheglpeplilrwgg
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1c16H (H:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm