PDB entry 1c16

View 1c16 on RCSB PDB site
Description: crystal structure analysis of the gamma/delta t cell ligand t22
Class: immune system
Keywords: non-classical MHC-like, major histocompatibility, beta2-microglobulin, immune system
Deposited on 1999-07-20, released 2000-01-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.284
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC-like protein t22
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOPe 2.08: d1c16a1, d1c16a2
  • Chain 'B':
    Compound: protein (beta-2-microglobulin)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c16b_
  • Chain 'C':
    Compound: MHC-like protein t22
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOPe 2.08: d1c16c1, d1c16c2
  • Chain 'D':
    Compound: protein (beta-2-microglobulin)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c16d_
  • Chain 'E':
    Compound: MHC-like protein t22
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOPe 2.08: d1c16e1, d1c16e2
  • Chain 'F':
    Compound: protein (beta-2-microglobulin)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c16f_
  • Chain 'G':
    Compound: MHC-like protein t22
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q31615 (0-259)
      • conflict (258-259)
    Domains in SCOPe 2.08: d1c16g1, d1c16g2
  • Chain 'H':
    Compound: protein (beta-2-microglobulin)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c16h_

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c16A (A:)
gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
ytchvyheglpeplilrwgg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c16B (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c16C (C:)
gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
ytchvyheglpeplilrwgg

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c16D (D:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1c16E (E:)
gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
ytchvyheglpeplilrwgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1c16E (E:)
gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
ptlnenpssctphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpegdvtlr
cwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqsytchvy
heglpeplilrwgg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c16F (F:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c16G (G:)
gshslryfytavsrpglgepwfiivgyvddmqvlrfsskeetprmapwleqeeadnweqq
trivtiqgqlsernlmtlvhfynksmddshtlqwlqgcdvepdrhlclwynqlaydsedl
ptlnenpssctvgnstvphisqdlkshcsdllqkylekgkerllrsdppkahvtrhprpe
gdvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkwaavvvplgkeqs
ytchvyheglpeplilrwgg

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c16H (H:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm