PDB entry 1c04

View 1c04 on RCSB PDB site
Description: identification of known protein and RNA structures in a 5 a map of the large ribosomal subunit from haloarcula marismortui
Class: ribosome
Keywords: low resolution model, large ribosome unit
Deposited on 1999-07-14, released 1999-08-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 5 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribosomal protein l2
    Species: Haloarcula marismortui [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c04a_
  • Chain 'B':
    Compound: ribosomal protein l6
    Species: Haloarcula marismortui [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c04b_
  • Chain 'C':
    Compound: ribosomal protein l11
    Species: Haloarcula marismortui [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c04c_
  • Chain 'D':
    Compound: ribosomal protein l14
    Species: Haloarcula marismortui [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1c04d_
  • Chain 'E':
    Compound: 23s rRNA fragment
    Species: Haloarcula marismortui [TaxId:2238]
  • Chain 'F':
    Compound: 23s rRNA fragment
    Species: Haloarcula marismortui [TaxId:2238]

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1c04A (A:)
qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
vrmilgkcratvgevgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1c04A (A:)
qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
vrmilgkcratvgev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1c04B (B:)
srvgkkpieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhh
ralhgttrsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegl
eievpsqtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrlkegktgk

    Sequence, based on observed residues (ATOM records): (download) 
    >1c04B (B:)
pieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhhralhgt
trsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegleievps
qtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c04C (C:)
ktppaavllkkaagiesgsgepnrnkvatikrdkvreiaelkmpdlnaasieaamrmieg
tarsmgi

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1c04D (D:)
miqqesrlkvadnsgarevlvikvlggsgrryanigdvvvatvkdatpggvvkkgqvvka
vvvrtkrgvrrpdgsyirfdenacviirddksprgtrifgpvarelrdkdfmkiislape
vi

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.