PDB entry 1bqh
View 1bqh on RCSB PDB site
Description: murine cd8aa ectodomain fragment in complex with h-2kb/vsv8
Class: immune system
Keywords: T-cell, coreceptor, glycoprotein, complex, immunology, antigen, immune system
Deposited on
1998-08-16, released
1998-08-19
The last revision prior to the SCOPe 2.02 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.212
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein (h-2 class I histocompatibility antigen)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1bqha1, d1bqha2 - Chain 'B':
Compound: protein (beta-2-microglobulin )
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1bqhb_ - Chain 'C':
Compound: protein (vsv8)
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: protein (h-2 class I histocompatibility antigen)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1bqhd1, d1bqhd2 - Chain 'E':
Compound: protein (beta-2-microglobulin )
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1bqhe_ - Chain 'F':
Compound: protein (vsv8)
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: protein (cd8a or lyt2 or lyt-2)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1bqhg_ - Chain 'H':
Compound: protein (cd8a or lyt2 or lyt-2)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01731 (0-End)
- conflict (122)
- conflict (124)
Domains in SCOPe 2.02: d1bqhh_ - Chain 'I':
Compound: protein (cd8a or lyt2 or lyt-2)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01731
- conflict (122)
- conflict (124)
Domains in SCOPe 2.02: d1bqhi_ - Chain 'K':
Compound: protein (cd8a or lyt2 or lyt-2)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01731 (0-End)
- conflict (122)
- conflict (124)
Domains in SCOPe 2.02: d1bqhk_ - Heterogens: NDG, NAG
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1bqhA (A:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrw
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1bqhB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1bqhD (D:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrw
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1bqhE (E:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'F':
No sequence available.
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1bqhG (G:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvssadlvp
Sequence, based on observed residues (ATOM records): (download)
>1bqhG (G:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kv
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1bqhH (H:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvssadlvp
Sequence, based on observed residues (ATOM records): (download)
>1bqhH (H:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvssa
- Chain 'I':
Sequence, based on SEQRES records: (download)
>1bqhI (I:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvssadlvp
Sequence, based on observed residues (ATOM records): (download)
>1bqhI (I:)
apelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymasshnki
twdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlqkvs
sa
- Chain 'K':
Sequence, based on SEQRES records: (download)
>1bqhK (K:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvssadlvp
Sequence, based on observed residues (ATOM records): (download)
>1bqhK (K:)
kpqapelrifpkkmdaelgqkvdlvcevlgsvsqgcswlfqnsssklpqptfvvymassh
nkitwdeklnssklfsamrdtnnkyvltlnkfskenegyyfcsvisnsvmyfssvvpvlq
kvssa