PDB entry 1bii

View 1bii on RCSB PDB site
Description: the crystal structure of h-2dd MHC class I in complex with the hiv-1 derived peptide p18-110
Class: complex (MHC I/peptide)
Keywords: complex (MHC I/peptide), major histocompatibility complex class I dd, transmembrane, glycoprotein
Deposited on 1998-06-11, released 1998-10-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.278
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I h-2dd
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1biia1, d1biia2
  • Chain 'B':
    Compound: beta-2 microglobulin
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1biib_
  • Chain 'P':
    Compound: decameric peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 1BII (0-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1biiA (A:)
    mgamaprtlllllaaalgptqtragshslryfvtavsrpgfgeprymevgyvdntefvrf
    dsdaenpryeprarwieqegpeyweretrrakgneqsfrvdlrtalryynqsaggshtlq
    wmagcdvesdgrllrgywqfaydgcdyialnedlktwtaadmaaqitrrkweqagaaerd
    raylegecvewlrrylkngnatllrtdppkahvthhrrpegdvtlrcwalgfypaditlt
    wqlngeeltqemelvetrpagdgtfqkwasvvvplgkeqkytchveheglpepltlrwgk
    eeppsstktntviiavpvvlgavvilgavmafvmkrrrntggkggdyalapgsqssdmsl
    pdckv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1biiA (A:)
    gshslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeyw
    eretrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydg
    cdyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatll
    rtdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpagdgt
    fqkwasvvvplgkeqkytchveheglpepltlrw
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1biiB (B:)
    marsvtlvflvlvsltglyaiqktpqiqvysrhppengkpnilncyvtqfhpphieiqml
    kngkkipkvemsdmsfskdwsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >1biiB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
    

  • Chain 'P':
    No sequence available.