PDB entry 1bii
View 1bii on RCSB PDB site
Description: the crystal structure of h-2dd MHC class I in complex with the hiv-1 derived peptide p18-110
Class: complex (MHC I/peptide)
Keywords: complex (MHC I/peptide), major histocompatibility complex class I dd, transmembrane, glycoprotein
Deposited on
1998-06-11, released
1998-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.278
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MHC class I h-2dd
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1biia1, d1biia2 - Chain 'B':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1biib_ - Chain 'P':
Compound: decameric peptide
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1biiA (A:)
mgamaprtlllllaaalgptqtragshslryfvtavsrpgfgeprymevgyvdntefvrf
dsdaenpryeprarwieqegpeyweretrrakgneqsfrvdlrtalryynqsaggshtlq
wmagcdvesdgrllrgywqfaydgcdyialnedlktwtaadmaaqitrrkweqagaaerd
raylegecvewlrrylkngnatllrtdppkahvthhrrpegdvtlrcwalgfypaditlt
wqlngeeltqemelvetrpagdgtfqkwasvvvplgkeqkytchveheglpepltlrwgk
eeppsstktntviiavpvvlgavvilgavmafvmkrrrntggkggdyalapgsqssdmsl
pdckv
Sequence, based on observed residues (ATOM records): (download)
>1biiA (A:)
gshslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeyw
eretrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydg
cdyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatll
rtdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpagdgt
fqkwasvvvplgkeqkytchveheglpepltlrw
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1biiB (B:)
marsvtlvflvlvsltglyaiqktpqiqvysrhppengkpnilncyvtqfhpphieiqml
kngkkipkvemsdmsfskdwsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>1biiB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'P':
No sequence available.