PDB entry 1ber

View 1ber on RCSB PDB site
Description: structure of the cap-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface
Class: complex (gene-regulatory protein/DNA)
Keywords: protein-DNA complex, gene-regulatory
Deposited on 1996-01-26, released 1996-07-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2002-03-01, with a file datestamp of 2007-04-25.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.199
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Catabolite gene activator
    Species: ESCHERICHIA COLI
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1bera3, d1bera4
  • Chain 'B':
    Compound: Catabolite gene activator
    Species: ESCHERICHIA COLI
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1berb3, d1berb4
  • Chain 'C':
    Compound: DNA (5'-d(*gp*cp*gp*ap*ap*ap*ap*gp*tp*gp*tp*gp*ap*c)-3')
  • Chain 'D':
    Compound: DNA (5'-d(*ap*tp*ap*tp*gp*tp*cp*ap*cp*ap*cp*tp*tp*tp*tp*cp*g)-3')
  • Chain 'E':
    Compound: DNA (5'-d(*gp*cp*gp*ap*ap*ap*ap*gp*tp*gp*tp*gp*ap*c)-3')
  • Chain 'F':
    Compound: DNA (5'-d(*ap*tp*ap*tp*gp*tp*cp*ap*cp*ap*cp*tp*tp*tp*tp*cp*g)-3')
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1berA (A:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
etvgrilkmledqnlisahgktivvygtr

    Sequence, based on observed residues (ATOM records): (download) 
    >1berA (A:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgrilk
mledqnlisahgktivvyg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1berB (B:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
etvgrilkmledqnlisahgktivvygtr

    Sequence, based on observed residues (ATOM records): (download) 
    >1berB (B:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgrilk
mledqnlisahgktivv

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.