SCOPe 2.07: Structural Classification of Proteins

PDB entry 1bcc

View 1bcc on RCSB PDB site
Description: cytochrome bc1 complex from chicken
Class: oxidoreductase
Keywords: ubiquinone, oxidoreductase, redox enzyme, membrane protein, respiratory chain, electron transport
Deposited on 1998-03-23, released 1998-08-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-10-29, with a file datestamp of 2014-10-24.
Experiment type: XRAY
Resolution: 3.16 Å
R-factor: 0.27
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P13272
  - conflict (22)
  - conflict (58)
  - conflict (71)
  - conflict (90)
  - conflict (105)
  - conflict (134-135)
  - conflict (146)
  - conflict (161)
  - conflict (173)
  - conflict (187)
  - conflict (190)
  - conflict (202)
  - conflict (205)
  - conflict (209)
  - conflict (216)
  - conflict (218-220)
  - conflict (224)
  - conflict (232)
  - conflict (241)
  - conflict (266)
  - conflict (281)
  - conflict (287)
  - conflict (289)
  - conflict (298)
  - conflict (310)
  - conflict (314-315)
  - conflict (319)
  - conflict (321-322)
  - conflict (327)
  - conflict (348-349)
  - conflict (359)
  - conflict (381)
  - conflict (392)
  - conflict (396)
  - conflict (398)
  - conflict (405)
  - conflict (414)
  - conflict (424)
Domains in SCOPe 2.07: d1bcca1, d1bcca2
Chain 'B':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P23004 (0-421)
  - conflict (8)
  - conflict (10)
  - conflict (24)
  - conflict (26)
  - conflict (28)
  - conflict (31)
  - conflict (43)
  - conflict (81)
  - conflict (99)
  - conflict (116)
  - conflict (121)
  - conflict (127)
  - conflict (134)
  - conflict (139)
  - conflict (156)
  - conflict (170)
  - conflict (176)
  - conflict (189)
  - conflict (200)
  - conflict (205)
  - conflict (222)
  - conflict (239)
  - conflict (248)
  - conflict (264)
  - conflict (303)
  - conflict (314)
  - conflict (317)
  - conflict (334)
  - conflict (337-338)
  - conflict (349)
  - conflict (362)
  - conflict (375)
  - conflict (394)
  - conflict (402-403)
  - conflict (418)
Domains in SCOPe 2.07: d1bccb1, d1bccb2
Chain 'C':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P18946 (Start-379)
Domains in SCOPe 2.07: d1bccc2, d1bccc3
Chain 'D':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P00125 (0-240)
  - conflict (16)
  - conflict (142)
  - conflict (166)
  - conflict (215)
  - conflict (220)
Domains in SCOPe 2.07: d1bccd2, d1bccd3
Chain 'E':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P13272 (0-195)
  - conflict (8)
  - conflict (16-19)
  - conflict (25)
  - conflict (28-30)
  - conflict (41)
  - conflict (44)
  - conflict (55)
Domains in SCOPe 2.07: d1bcce1, d1bcce2
Chain 'F':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P00129 (Start-108)
  - conflict (28)
  - conflict (37)
  - conflict (58)
  - conflict (68)
  - conflict (86-87)
  - conflict (107)
Domains in SCOPe 2.07: d1bccf_
Chain 'G':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P13271
  - conflict (12)
  - conflict (24)
  - conflict (33)
  - conflict (37)
  - conflict (40)
  - conflict (52)
  - conflict (57)
  - conflict (77)
Domains in SCOPe 2.07: d1bccg_
Chain 'H':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P00126 (Start-77)
  - conflict (58)
Domains in SCOPe 2.07: d1bcch_
Chain 'I':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- PDB 1BCC (0-32)
Chain 'J':
Compound: ubiquinol cytochrome c oxidoreductase
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Uniprot P00130 (Start-61)
  - conflict (29)
Domains in SCOPe 2.07: d1bccj_
Heterogens: BOG, HEM, FES, U10, PEE

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1bccA (A:)
tayyaqalqsvpetqvsqldngvrvaseqssqptctvgvwidagsryeseknngagyfle
hlafkgtknrpqnalekevesmgahlnayssrehtayyikalskdvpkavelladivqnc
sledsqiekerdvivrelqendtsmrevvfnylhatafqgtglaqsvegpsenirklsra
dlteylsthytaprmvlaaaggvehqqllelaqkhfggvpftydddavptlskcrftgsq
irhredglplahvaiavegpgwahpdlvalqvanaiighydrtyggglhsssplasiavt
nklcqsfqtfsicysetglfgfyfvcdrmsiddmmfvlqgqwmrlctsisesevlrgknf
lrnalvshldgttpvcedigrelltygrripleeweerlaevdarmvrevcskyiydqcp
avagpgpieqlpdynrirsgmfwlrf

Sequence, based on observed residues (ATOM records): (download)

>1bccA (A:)
yaqalqsvpetqvsqldngvrvaseqssqptctvgvwidagsryeseknngagyflehla
fkgtknrpqnalekevesmgahlnayssrehtayyikalskdvpkavelladivqncsle
dsqiekerdvivrelqendtsmrevvfnylhatafqgtglaqsvegpsenirklsradlt
eylsthytaprmvlaaaggvehqqllelaqkhfggvpftydddavptlskcrftgsqirh
redglplahvaiavegpgwahpdlvalqvanaiighydrtyggglhsssplasiavtnkl
cqsfqtfsicysetglfgfyfvcdrmsiddmmfvlqgqwmrlctsisesevlrgknflrn
alvshldgttpvcedigrelltygrripleeweerlaevdarmvrevcskyiydqcpava
gpgpieqlpdynrirsgmfwlr

Chain 'B':
Sequence, based on SEQRES records: (download)

>1bccB (B:)
pphpqdleitklpnglviaslenyspgstigvfikagsryenssnlgtshllrlassltt
kgassfkitrgieavggklsvestrenmaytveclrddveilmefllnvttapefrpwev
adlqpqlkidkavafqnpqthvienlhaaayrnaladslycpdyrigkvtsvelhdfvqn
hftsarmalvglgvshpvlknvaeqllnirgglglsgakakyrggeireqngdslvhaai
vaesaaiggaeanafsvlqhvlganphvkrglnatsslyqavakgvhnpfdvsafnasys
dsglfgfytisqaayagqvikaaynqvktiaqgnvsnenvqaaknklkakylmsvesseg
fleevgsqalaagsynppstvlqqidavadadvikaakkfvsrqksmaasgnlghtpfvd
el

Sequence, based on observed residues (ATOM records): (download)

>1bccB (B:)
pphpqdleitklpnglviaslenyspgstigvfikagsryenssnlgtshllrlassltt
kgassfkitrgieavggklsvestrenmaytveclrddveilmefllnvttapefrpwev
adlqpqlkidkavafqnpqthvienlhaaayrnaladslycpdyrigkvtsvelhdfvqn
hftsarmalvglgvshpvlknvaeqllnirgglglsgakakyrggeireqngdslvhaai
vaesaaiggaeanafsvlqhvlganphvkrgnpfdvsafnasysdsglfgfytisqaaya
gqvikaaynqvktiaqgnvsnenvqaaknklkakylmsvessegfleevgsqalaagsyn
ppstvlqqidavadadvikaakkfvsrqksmaasgnlghtpfvdel

Chain 'C':
Sequence, based on SEQRES records: (download)

>1bccC (C:)
mapnirkshpllkminnslidlpapsnisawwnfgsllavclmtqiltglllamhytadt
slafssvahtcrnvqygwlirnlhangasffficiflhigrglyygsylyketwntgvil
lltlmatafvgyvlpwgqmsfwgatvitnlfsaipyightlvewawggfsvdnptltrff
alhfllpfaiagitiihltflhesgsnnplgissdsdkipfhpyysfkdilgltlmltpf
ltlalfspnllgdpenftpanplvtpphikpewyflfayailrsipnklggvlalaasvl
ilflipflhkskqrtmtfrplsqtlfwllvanlliltwigsqpvehpfiiigqmaslsyf
tillilfptigtlenkmlny

Sequence, based on observed residues (ATOM records): (download)

>1bccC (C:)
apnirkshpllkminnslidlpapsnisawwnfgsllavclmtqiltglllamhytadts
lafssvahtcrnvqygwlirnlhangasffficiflhigrglyygsylyketwntgvill
ltlmatafvgyvlpwgqmsfwgatvitnlfsaipyightlvewawggfsvdnptltrffa
lhfllpfaiagitiihltflhesgsnnplgissdsdkipfhpyysfkdilgltlmltpfl
tlalfspnllgdpenftpanplvtpphikpewyflfayailrsipnklggvlalaasvli
lflipflhkskqrtmtfrplsqtlfwllvanlliltwigsqpvehpfiiigqmaslsyft
illilfptigtlenkmlny

Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)

>1bccD (D:)
sdlelhppsypwshrgplssldhtsirrgfqvykqvcsschsmdyvayrhlvgvcytede
akalaeevevqdgpnedgemfmrpgklsdyfpkpypnpeaaraanngalppdlsyivrar
hggedyvfslltgycepptgvsvreglyfnpyfpgqaigmappiyndvlefddgtpatms
qvakdvctflrwaaepehdhrkrmglkmllmmgllvplvyymkrhkwsvlksrklayrpp
k

Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)

>1bccE (E:)
shtdikvpnfsdyrrppddystkssresdpsrkgfsylvtavttlgvayaaknvvtqfvs
smsasadvlamskieiklsdipegknmafkwrgkplfvrhrtkkeidqeaavevsqlrdp
qhdlervkkpewviligvcthlgcvpianagdfggyycpchgshydasgrirkgpaplnl
evpsyeftsddmvivg

Chain 'F':
Sequence, based on SEQRES records: (download)

>1bccF (F:)
agrpavsassrwlegirkwyynaagfnkyglmrddtiyenddvkeairrlpenlyddrmf
rikraldlnmrqqilpkeqwtkyeedvpylepylkevirerkereewdk

Sequence, based on observed residues (ATOM records): (download)

>1bccF (F:)
srwlegirkwyynaagfnkyglmrddtiyenddvkeairrlpenlyddrmfrikraldln
mrqqilpkeqwtkyeedvpylepylkevirerkereewdk

Chain 'G':
Sequence, based on SEQRES records: (download)

>1bccG (G:)
grqfghltrvrhlityslspfeqrpfphyfskgvpnvwrrlracilrvappflafyllyt
wgtqefekskrknpaayvndr

Sequence, based on observed residues (ATOM records): (download)

>1bccG (G:)
rqfghltrvrhlityslspfeqrpfphyfskgvpnvwrrlracilrvappflafyllytw
gtqefekskrknpaayvn

Chain 'H':
Sequence, based on SEQRES records: (download)

>1bccH (H:)
gdpkeeeeeeeelvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelfd
flhardhcvahklfnslk

Sequence, based on observed residues (ATOM records): (download)

>1bccH (H:)
lvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelfdflhardhcvahk
lfnslk

Chain 'I':
No sequence available.

Chain 'J':
Sequence, based on SEQRES records: (download)

>1bccJ (J:)
vaptltarlysllfrrtstfaltivvgallferafdqgadaiyehinegklwkhikhkye
nk

Sequence, based on observed residues (ATOM records): (download)

>1bccJ (J:)
tltarlysllfrrtstfaltivvgallferafdqgadaiyehinegklwkhikhkyenk