SCOPe 2.08: Structural Classification of Proteins

PDB entry 1b25

View 1b25 on RCSB PDB site
Description: formaldehyde ferredoxin oxidoreductase from pyrococcus furiosus
Class: oxidoreductase
Keywords: moco, tungstoenzyme, tungsten containing protein, hyperthermophile, oxidoreductase
Deposited on 1998-12-04, released 1999-03-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-12-07, with a file datestamp of 2011-12-02.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.174
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: protein (formaldehyde ferredoxin oxidoreductase)
Species: Pyrococcus furiosus [TaxId:2261]
Database cross-references and differences (RAF-indexed):
- Uniprot O93738 (0-618)
- PDB 1B25 (0-618)
Domains in SCOPe 2.08: d1b25a1, d1b25a2
Chain 'B':
Compound: protein (formaldehyde ferredoxin oxidoreductase)
Species: Pyrococcus furiosus [TaxId:2261]
Database cross-references and differences (RAF-indexed):
- Uniprot O93738 (0-618)
- PDB 1B25 (0-618)
Domains in SCOPe 2.08: d1b25b1, d1b25b2
Chain 'C':
Compound: protein (formaldehyde ferredoxin oxidoreductase)
Species: Pyrococcus furiosus [TaxId:2261]
Database cross-references and differences (RAF-indexed):
- Uniprot O93738 (0-618)
- PDB 1B25 (0-618)
Domains in SCOPe 2.08: d1b25c1, d1b25c2
Chain 'D':
Compound: protein (formaldehyde ferredoxin oxidoreductase)
Species: Pyrococcus furiosus [TaxId:2261]
Database cross-references and differences (RAF-indexed):
- Uniprot O93738 (0-618)
- PDB 1B25 (0-618)
Domains in SCOPe 2.08: d1b25d1, d1b25d2
Heterogens: SF4, PTT, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1b25A (A:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapiegekaekveykisydpikaqkvvelqrl
rgglfemltacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvre
fngkwdrkmdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketl
keldldfvipelekvtnle

Sequence, based on observed residues (ATOM records): (download)

>1b25A (A:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapieykisydpikaqkvvelqrlrgglfeml
tacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvrefngkwdrk
mdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketlkeldldfv
ipelekvtnle

Chain 'B':
Sequence, based on SEQRES records: (download)

>1b25B (B:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapiegekaekveykisydpikaqkvvelqrl
rgglfemltacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvre
fngkwdrkmdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketl
keldldfvipelekvtnle

Sequence, based on observed residues (ATOM records): (download)

>1b25B (B:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapieykisydpikaqkvvelqrlrgglfeml
tacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvrefngkwdrk
mdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketlkeldldfv
ipelekvtnle

Chain 'C':
Sequence, based on SEQRES records: (download)

>1b25C (C:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapiegekaekveykisydpikaqkvvelqrl
rgglfemltacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvre
fngkwdrkmdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketl
keldldfvipelekvtnle

Sequence, based on observed residues (ATOM records): (download)

>1b25C (C:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapieykisydpikaqkvvelqrlrgglfeml
tacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvrefngkwdrk
mdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketlkeldldfv
ipelekvtnle

Chain 'D':
Sequence, based on SEQRES records: (download)

>1b25D (D:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapiegekaekveykisydpikaqkvvelqrl
rgglfemltacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvre
fngkwdrkmdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketl
keldldfvipelekvtnle

Sequence, based on observed residues (ATOM records): (download)

>1b25D (D:)
mygwwgrilrvnlttgevkvqeypeevakkfiggrglaawilwneargveplspenklif
aagpfnglptpsggklvvaakspltggygdgnlgtmasvhlrragydalvvegkakkpvy
iyieddnvsilsaeglwgkttfeterelkeihgknvgvltigpagenlvkyavvisqegr
aagrpgmgavmgskklkavvirgtkeipvadkeelkklsqeayneilnspgypfwkrqgt
maavewcntnyalptrnfsdgyfefarsidgytmegmkvqqrgcpycnmpcgnvvldaeg
qeseldyenvallgsnlgigklnevsvlnriademgmdtislgvsiahvmeavergilke
gptfgdfkgakqlaldiayrkgelgnlaaegvkamaeklgthdfamhvkglevsgyncyi
ypamalaygtsaigahhkeawviaweigtapieykisydpikaqkvvelqrlrgglfeml
tacrlpwvevglsldyypkllkaitgvtytwddlykaadrvysliraywvrefngkwdrk
mdyppkrwfteglksgphkgehldekkydellseyyrirgwdergipkketlkeldldfv
ipelekvtnle