PDB entry 1avz

View 1avz on RCSB PDB site
Description: v-1 nef protein in complex with wild type fyn sh3 domain
Class: complex (myristylation/transferase)
Keywords: COMPLEX (MYRISTYLATION-TRANSFERASE), GTP-BINDING, HIV-1, PHOSPHORYLATION, NEF, SH3 DOMAIN, FYN, TYROSINE KINASE, COMPLEX (MYRISTYLATION-TRANSFERASE) complex
Deposited on 1997-09-23, released 1998-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-11, with a file datestamp of 2018-04-06.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: negative factor
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: HIV-1 NEF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1avza_
  • Chain 'B':
    Compound: negative factor
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: HIV-1 NEF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1avzb_
  • Chain 'C':
    Compound: fyn tyrosine kinase
    Species: Homo sapiens [TaxId:9606]
    Gene: FYN TYROSINE KINASE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1avzc_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1avzA (A:)
gsleaqeeeevgfpvtpqvplrpmtykaavdlshflkekggleglihsqrrqdildlwiy
htqgyfpdwqnytpgpgvrypltfgwcyklvpvepdkveeankgentsllhpvslhgmdd
perevlewrfdsrlafhhvarelhpeyfknc

    Sequence, based on observed residues (ATOM records): (download) 
    >1avzA (A:)
vplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytpgpgv
rypltfgwcyklvpvevlewrfdsrlafhhvarelhpeyf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1avzB (B:)
gsleaqeeeevgfpvtpqvplrpmtykaavdlshflkekggleglihsqrrqdildlwiy
htqgyfpdwqnytpgpgvrypltfgwcyklvpvepdkveeankgentsllhpvslhgmdd
perevlewrfdsrlafhhvarelhpeyfknc

    Sequence, based on observed residues (ATOM records): (download) 
    >1avzB (B:)
tpqvplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytpg
pgvrypltfgwcyklvpvevlewrfdsrlafhhvarelhpeyf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1avzC (C:)
tlfvalydyearteddlsfhkgekfqilnssegdwwearslttgetgyipsnyvapv