PDB entry 1av6

View 1av6 on RCSB PDB site
Description: vaccinia methyltransferase vp39 complexed with m7g capped RNA hexamer and s-adenosylhomocysteine
Class: transferase/RNA
Keywords: SINGLE-STRANDED RNA, METHYLTRANSFERASE, RNA CAP, POLY(A) POLYMERASE, VACCINIA, MRNA PROCESSING, TRANSCRIPTION, COMPLEX (TRANSFERASE-RNA), TRANSFERASE-RNA complex
Deposited on 1997-09-26, released 1998-02-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
    Species: Vaccinia virus WR [TaxId:10254]
    Gene: PAPS, VACWR095, F9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1av6a_
  • Chain 'B':
    Compound: RNA (5'-r(*gp*ap*ap*ap*ap*a)-3')
  • Heterogens: MGT, SAH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1av6A (A:)
vvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgildga
tvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeeylr
sikkqlhpskiilisdvrskrggnepstadllsnyalqnvmisilnpvasslkwrcpfpd
qwikdfyiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyylnki
vrnkvvvnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

    Sequence, based on observed residues (ATOM records): (download) 
    >1av6A (A:)
vvsldkpfmyfeeidneldyepesanevakklpyqgqlklllgelfflsklqrhgildga
tvvyigsapgthirylrdhfynlgviikwmlidgrhhdpilnglrdvtlvtrfvdeeylr
sikkqlhpskiilisdvrspstadllsnyalqnvmisilnpvasslkwrcpfpdqwikdf
yiphgnkmlqpfapsysaemrllsiytgenmrltrvtksdavnyekkmyylnkivrnkvv
vnfdypnqeydyfhmyfmlrtvycnktfpttkakvlflqqsifrflnip

  • Chain 'B':
    No sequence available.