PDB entry 1aoi
View 1aoi on RCSB PDB site
Description: complex between nucleosome core particle (h3,h4,h2a,h2b) and 146 bp long DNA fragment
Class: DNA binding protein/DNA
Keywords: nucleosome, chromatin, histone, protein DNA interaction, nucleoprotein, supercoiled DNA
Deposited on
1997-07-03, released
1998-09-30
The last revision prior to the SCOP 1.75 freeze date was dated
2003-04-01, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.224
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: histone h3
Species: LAEVIS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1aoia_ - Chain 'B':
Compound: histone h4
Species: LAEVIS, synthetic
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1aoib_ - Chain 'C':
Compound: histone h2a
Species: LAEVIS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1aoic_ - Chain 'D':
Compound: histone h2b
Species: LAEVIS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1aoid_ - Chain 'E':
Compound: histone h3
Species: LAEVIS
Database cross-references and differences (RAF-indexed):
- Uniprot P02302 (0-115)
- conflict (1)
- conflict (6)
- conflict (8)
- conflict (66)
Domains in SCOP 1.75: d1aoie_ - Chain 'F':
Compound: histone h4
Species: LAEVIS, synthetic
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1aoif_ - Chain 'G':
Compound: histone h2a
Species: LAEVIS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1aoig_ - Chain 'H':
Compound: histone h2b
Species: LAEVIS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1aoih_ - Chain 'I':
Compound: palindromic 146 bp DNA repeat 8/9 from human x-chromosome alpha satellite DNA
- Chain 'J':
Compound: palindromic 146 bp DNA repeat 8/9 from human x-chromosome alpha satellite DNA
- Heterogens: MN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1aoiA (A:)
latkaarksapatggvkkphryrpgtvalreirryqkstellirklpfqrlvreiaqdfk
tdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>1aoiA (A:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
aylvalfedtnlcaihakrvtimpkdiqlarrirgera
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1aoiB (B:)
krhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteh
akrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>1aoiB (B:)
kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
tvtamdvvyalkrqgrtlygfgg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1aoiC (C:)
gkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeil
elagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
Sequence, based on observed residues (ATOM records): (download)
>1aoiC (C:)
gkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeil
elagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1aoiD (D:)
kkrrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkr
stitsreiqtavrlllpgelakhavsegtkavtkytsak
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1aoiE (E:)
latkaarksapatggvkkphryrpgtvalreirryqkstellirklpfqrlvreiaqdfk
tdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1aoiF (F:)
krhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteh
akrktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1aoiG (G:)
gkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeil
elagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
Sequence, based on observed residues (ATOM records): (download)
>1aoiG (G:)
akaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaar
dnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1aoiH (H:)
kkrrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkr
stitsreiqtavrlllpgelakhavsegtkavtkytsak
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.