PDB entry 1akj
View 1akj on RCSB PDB site
Description: complex of the human MHC class I glycoprotein hla-a2 and the t cell coreceptor cd8
Class: complex (MHC I/peptide/cd8)
Keywords: T-cell, glycoprotein, signal, complex, immunology, complex (MHC I/peptide/cd8)
Deposited on
1997-05-21, released
1997-09-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.206
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MHC class I histocompatibility antigen (hla-a*0201) (alpha chain)
Species: Homo sapiens [TaxId:9606]
Gene: BETA-2-MICROGLOBULIN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1akja1, d1akja2 - Chain 'B':
Compound: beta 2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: BETA-2-MICROGLOBULIN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1akjb_ - Chain 'C':
Compound: hiv reverse transcriptase epitope
Species: Human immunodeficiency virus [TaxId:12721]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: T-cell coreceptor cd8
Species: Homo sapiens [TaxId:9606]
Gene: BETA-2-MICROGLOBULIN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1akjd_ - Chain 'E':
Compound: T-cell coreceptor cd8
Species: Homo sapiens [TaxId:9606]
Gene: BETA-2-MICROGLOBULIN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1akje_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1akjA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwep
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1akjB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
Sequence, based on observed residues (ATOM records): (download)
>1akjB (B:)
qrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdws
fyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1akjD (D:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpakptttp
Sequence, based on observed residues (ATOM records): (download)
>1akjD (D:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpa
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1akjE (E:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpakptttp
Sequence, based on observed residues (ATOM records): (download)
>1akjE (E:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpa