PDB entry 1agq
View 1agq on RCSB PDB site
Description: glial cell-derived neurotrophic factor from rat
Class: growth factor
Keywords: growth factor, neurotrophic factor, cystine knot
Deposited on
1997-03-25, released
1997-06-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.203
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: glial cell-derived neurotrophic factor
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1agqa_ - Chain 'B':
Compound: glial cell-derived neurotrophic factor
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1agqb_ - Chain 'C':
Compound: glial cell-derived neurotrophic factor
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1agqc_ - Chain 'D':
Compound: glial cell-derived neurotrophic factor
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1agqd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1agqA (A:)
mspdkqaaalprrernrqaaaaspensrgkgrrgqrgknrgcvltaihlnvtdlglgyet
keelifrycsgsceaaetmydkilknlsrsrrltsdkvgqaccrpvafdddlsflddslv
yhilrkhsakrcgci
Sequence, based on observed residues (ATOM records): (download)
>1agqA (A:)
nrgcvltaihlnvtdlglgyetkeelifrycsgsceaaetmydkilknlsrsrvgqaccr
pvafdddlsflddslvyhilrkhsakrcgci
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1agqB (B:)
mspdkqaaalprrernrqaaaaspensrgkgrrgqrgknrgcvltaihlnvtdlglgyet
keelifrycsgsceaaetmydkilknlsrsrrltsdkvgqaccrpvafdddlsflddslv
yhilrkhsakrcgci
Sequence, based on observed residues (ATOM records): (download)
>1agqB (B:)
knrgcvltaihlnvtdlglgyetkeelifrycsgsceaaetmydkilknlsrsrrltsvg
qaccrpvafdddlsflddslvyhilrkhsakrcgci
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1agqC (C:)
mspdkqaaalprrernrqaaaaspensrgkgrrgqrgknrgcvltaihlnvtdlglgyet
keelifrycsgsceaaetmydkilknlsrsrrltsdkvgqaccrpvafdddlsflddslv
yhilrkhsakrcgci
Sequence, based on observed residues (ATOM records): (download)
>1agqC (C:)
gcvltaihlnvtdlglgyetkeelifrycsgsceaaetmydkilknlsrsrrlvgqaccr
pvafdddlsflddslvyhilrkhsakrcgci
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1agqD (D:)
mspdkqaaalprrernrqaaaaspensrgkgrrgqrgknrgcvltaihlnvtdlglgyet
keelifrycsgsceaaetmydkilknlsrsrrltsdkvgqaccrpvafdddlsflddslv
yhilrkhsakrcgci
Sequence, based on observed residues (ATOM records): (download)
>1agqD (D:)
gcvltaihlnvtdlglgyetkeelifrycsgsceaaetmydkilknlsrsrrltsdkvgq
accrpvafdddlsflddslvyhilrkhsakrcgci