PDB entry 1agf
View 1agf on RCSB PDB site
Description: antagonist hiv-1 gag peptides induce structural changes in hla b8-hiv-1 gag peptide (ggkkrykl-5r mutation)
Class: histocompatibility complex
Keywords: hla b8, hiv, MHC class I, histocompatibility complex
Deposited on
1997-03-24, released
1997-06-16
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.181
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: b*0801
Species: Homo sapiens [TaxId:9606]
Gene: GAG
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1agfa1, d1agfa2 - Chain 'B':
Compound: beta-2 microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: GAG
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1agfb_ - Chain 'C':
Compound: hiv-1 gag peptide (ggkkrykl - 5r mutation)
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1agfA (A:)
gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1agfB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.