Other Sequences 2.03
This page contains sequence sets for people with special needs.
For most users, we recommend
the standard
sequence sets .
These are sequences for every PDB
chain included in the
Rapid Access Format
PDB ATOM—SEQRES
correspondence maps
used to generate Astral :
Full set of Astral chain
sequences, based on PDB SEQRES
records:
download sequences (34.5 MB)
Full set of Astral chain
sequences, based on PDB ATOM
records:
download sequences (33.1 MB)
Astral chain sequence
subset, based on PDB SEQRES
records,
nonredundant (less than 100% identity to each other): download sequences (8.6 MB) , identifiers , or the verbose selection log .
Astral chain sequence
subset, based on PDB SEQRES
records,
less than 95% identity to each other: download sequences (4.6 MB) , identifiers , or the verbose selection log .
Astral chain sequence
subset, based on PDB SEQRES
records,
less than 90% identity to each other: download sequences (4.2 MB) , identifiers , or the verbose selection log .
These are sequences for domains in SCOPe classes beyond the first 7 (i.e., "h: Coiled coil proteins" and above).
Note: The classification of proteins in
SCOP
classes beyond the first 7 has been described by the
SCOP curator
as not part of the proper
SCOP classification .
Therefore, these sequences are not recommended
unless you really need them:
All Astral SCOPe genetic domain
sequences, based on PDB SEQRES
records, for SCOPe classes 8 and
above:
download sequences (1.1 MB)
SCOPe: Structural Classification of Proteins — extended. Release 2.03 (updated 2016-04-15, stable release October 2013)
References:
Fox NK, Brenner SE, Chandonia JM. 2014.
Nucleic Acids Research 42 :D304-309 . doi: 10.1093/nar/gkt1240.
Chandonia JM, Guan L, Lin S, Yu C, Fox NK, Brenner SE. 2022.
Nucleic Acids Research 50 :D553–559 . doi: 10.1093/nar/gkab1054.
(citing information)
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and SCOPe
authors
scope@compbio.berkeley.edu