Genetic Domain Sequences 1.59

• Notes on changes in this release.

• All Astral SCOP genetic domain sequences, based on PDB SEQRES records: download sequences (10 MB)

• All Astral SCOP genetic domain sequences, based on PDB ATOM records: download sequences (10 MB)
  These are not recommended unless you have a special need.

  Percentage identity-filtered Astral SCOP genetic domain sequence subsets, based on PDB SEQRES records.
  identifiers only sequences identifiers & log with less than 100 95 90 70 50 40 35 30 25 20 10 percent identity (using "in both" criterion).

  E-value filtered Astral SCOP genetic domain sequence subsets, based on PDB SEQRES records.
  identifiers only sequences identifiers & log with E-values >= 10 5 1 0.5 0.1 0.05 0.01 0.005 0.001 1e-4 1e-5 1e-10 1e-15 1e-20 1e-25 1e-50 (in a database size of 100,000,000 residues).

  SCOP filtered Astral SCOP genetic domain sequence subsets, based on PDB SEQRES records.
  identifiers only sequences identifiers & log that represent each Class Fold Superfamily Family Protein Protein & Species in SCOP.

• Retrieve sequences for individual SCOP domains and PDB chains (one at a time).

• Original-style (not genetic) domain sequences and subsets.

• Other sequences and subsets.

• PDB-style files with coordinates for each SCOP domain.

• Direct access to files, or all files bundled in a gzipped tar file (76.2 MB)