Genetic Domain Sequences 1.55

• Notes on changes in this release.

• All Astral SCOP genetic domain sequences, based on PDB SEQRES records: download sequences (7.9 MB)

• All Astral SCOP genetic domain sequences, based on PDB ATOM records: download sequences (7.9 MB)
  These are not recommended unless you have a special need.

  Percentage identity-filtered Astral SCOP genetic domain sequence subsets, based on PDB SEQRES records.
  identifiers only sequences with less than 100 95 90 70 50 40 35 30 25 20 10 percent identity (using "in both" criterion).

  E-value filtered Astral SCOP genetic domain sequence subsets, based on PDB SEQRES records.
  identifiers only sequences with E-values >= 10 5 1 0.5 0.1 0.05 0.01 0.005 0.001 1e-4 1e-5 1e-10 1e-15 1e-20 1e-25 1e-50 (in a database size of 100,000,000 residues).

  SCOP filtered Astral SCOP genetic domain sequence subsets, based on PDB SEQRES records.
  identifiers only sequences that represent each Class Fold Superfamily Family Protein & Species in SCOP.

• Retrieve sequences for individual SCOP domains and PDB chains (one at a time).

• Original-style (not genetic) domain sequences and subsets.

• PDB-style files with coordinates for each SCOP domain.

• Direct access to files, or all files bundled in a gzipped tar file (29.9 MB)