SPACI score report for 2dpd in ASTRAL 2.08:

PDB Entry: 2dpd
SPACI score: 0.18
AEROSPACI score: 0.18 (mutant; see below)

Experiment type: XRAY
Resolution: 3.17
R-factor: 0.238
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 2
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.686
WCK2 WHAT_CHECK Ramachandran: -5.384
WCK3 WHAT_CHECK Chi angles: -4.667
WCK4 WHAT_CHECK Backbone: 0.259

The AEROSPACI score for this entry is lower than the SPACI score because human-curated comments on the entry in SCOPe contain the phrase mutant. The full comment is: "mutant; automatically matched to d1j0rb_; automated match to d1bm9a_"

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).