SPACI score report for 4nyi in ASTRAL 2.07:

WARNING! The SPACI score for this entry is not valid. The PROCHECK parameters for this entry could not be obtained, and poor results have been arbitrarily assumed.

PDB Entry: 4nyi
SPACI score: 0.23 (not valid)
AEROSPACI score: 0.23 (not valid)

Experiment type: XRAY
Resolution: 2.96
R-factor: 0.167
PCK1 PROCHECK Ramachandran: N/A
PCK2 PROCHECK Chi-1 angle: N/A
PCK3 PROCHECK H-bonds: N/A
WCK1 WHAT_CHECK Packing: -0.754
WCK2 WHAT_CHECK Ramachandran: -1.542
WCK3 WHAT_CHECK Chi angles: -2.826
WCK4 WHAT_CHECK Backbone: 3.888

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).