SPACI score report for 3e6d in ASTRAL 2.07:

PDB Entry: 3e6d
SPACI score: 0.39
AEROSPACI score: 0.39

Experiment type: XRAY
Resolution: 2
R-factor: 0.233
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 2
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.689
WCK2 WHAT_CHECK Ramachandran: -1.574
WCK3 WHAT_CHECK Chi angles: -1.833
WCK4 WHAT_CHECK Backbone: 0.149

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).