SPACI score report for 2yf6 in ASTRAL 2.05:

PDB Entry: 2yf6
SPACI score: 0.19
AEROSPACI score: 0.19

Experiment type: XRAY
Resolution: 2.8
R-factor: 0.2748
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 2
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -2.314
WCK2 WHAT_CHECK Ramachandran: -2.771
WCK3 WHAT_CHECK Chi angles: -4.11
WCK4 WHAT_CHECK Backbone: 2.115

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).