SPACI score report for 3qq9 in ASTRAL 2.04:

PDB Entry: 3qq9
SPACI score: 0.58
AEROSPACI score: 0.58

Experiment type: XRAY
Resolution: 1.64
R-factor: 0.175
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 1
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.591
WCK2 WHAT_CHECK Ramachandran: -1.543
WCK3 WHAT_CHECK Chi angles: -1.242
WCK4 WHAT_CHECK Backbone: 2.765

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).