SPACI score report for 1pd3 in ASTRAL 2.02:

PDB Entry: 1pd3
SPACI score: 0.33
AEROSPACI score: 0.33

Experiment type: XRAY
Resolution: 2.6
R-factor: 0.179
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 3
PCK3 PROCHECK H-bonds: 1
WCK1 WHAT_CHECK Packing: 0.658
WCK2 WHAT_CHECK Ramachandran: -0.741
WCK3 WHAT_CHECK Chi angles: -5.113
WCK4 WHAT_CHECK Backbone: 6.63

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).