SPACI score report for 1ygy in ASTRAL 1.73:

PDB Entry: 1ygy
SPACI score: 0.31
AEROSPACI score: 0.31

Experiment type: XRAY
Resolution: 2.3
R-factor: 0.207
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 3
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.796
WCK2 WHAT_CHECK Ramachandran: -1.992
WCK3 WHAT_CHECK Chi angles: -3.756
WCK4 WHAT_CHECK Backbone: -4.735

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).