call loadScript ..\..\js\core\package.js
call loadScript ..\..\js\core\core.z.js -- required by ClazzNode
call loadScript ..\..\js\J\awtjs2d\WebOutputChannel.js
Jmol JavaScript applet jmol_object__024189417907412__ initializing
getValue debug = null
getValue logLevel = null
getValue allowjavascript = null
AppletRegistry.checkIn(jmol_object__024189417907412__)
call loadScript ..\..\js\core\corestate.z.js
viewerOptions:
{ "name":"jmol_object","applet":true,"documentBase":"http://scop.berkeley.edu/astral/jmolview/?context=1&id=d1upcf2","platform":"J.awtjs2d.Platform","fullName":"jmol_object__024189417907412__","display":"jmol_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol.MyStatusListener object]","codeBase":"http://scop.berkeley.edu/astral/jmolview/../../js/j2s/","syncId":"024189417907412","bgcolor":"white" }
(C) 2012 Jmol Development
Jmol Version: 13.2.7 $Date: 2013-10-01 11:35:15 -0500 (Tue, 01 Oct 2013) $
java.vendor: j2s
java.version: 0.0
os.name: j2s
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmol_object (signed)
starting HoverWatcher_1
getValue emulate = null
defaults = "Jmol"
getValue boxbgcolor = null
getValue bgcolor = white
backgroundColor = "white"
getValue ANIMFRAMECallback = null
getValue APPLETREADYCallback = Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
getValue ATOMMOVEDCallback = null
getValue CLICKCallback = null
getValue ECHOCallback = null
getValue ERRORCallback = null
getValue EVALCallback = null
getValue HOVERCallback = null
getValue LOADSTRUCTCallback = null
getValue MEASURECallback = null
getValue MESSAGECallback = null
getValue MINIMIZATIONCallback = null
getValue PICKCallback = null
getValue RESIZECallback = null
getValue SCRIPTCallback = null
getValue SYNCCallback = null
getValue STRUCTUREMODIFIEDCallback = null
getValue doTranslate = null
language=en_US
getValue popupMenu = null
getValue script = null
Jmol applet jmol_object__024189417907412__ ready
call loadScript ..\..\js\core\corescript.z.js
call loadScript ..\..\js\J\script\FileLoadThread.js
starting QueueThread0_2
script 1 started
FileManager.getAtomSetCollectionFromFile(../../pdbdata/090323/files/hash/up/pdb1upc.ent.gz)
starting HoverWatcher_3
FileManager opening 1 http://scop.berkeley.edu/pdbdata/090323/files/hash/up/pdb1upc.ent.gz
call loadScript ..\..\js\core\corezip.z.js
The Resolver thinks Pdb
call loadScript ..\..\js\core\corebio.z.js
SYNTHASE 29-SEP-03 1UPC
CARBOXYETHYLARGININE SYNTHASE FROM STREPTOMYCES
CLAVULIGERUS
call loadScript ..\..\js\core\coresym.z.js
biomolecule 1: number of transforms: 1
biomolecule 2: number of transforms: 2
Setting space group name to P 21 21 2
Time for openFile(../../pdbdata/090323/files/hash/up/pdb1upc.ent.gz): 3435 ms
reading 26083 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
26083 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
SYNTHASE 29-SEP-03 1UPC
CARBOXYETHYLARGININE SYNTHASE FROM STREPTOMYCES
CLAVULIGERUS
21747 atoms hidden
26083 atoms selected
25009 atoms selected
21893 atoms hidden
1332 atoms selected
Script completed
Jmol script terminated
