call loadScript ..\..\js\core\package.js
call loadScript ..\..\js\core\core.z.js -- required by ClazzNode
call loadScript ..\..\js\J\awtjs2d\WebOutputChannel.js
Jmol JavaScript applet jmol_object__78865827425629__ initializing
getValue debug = null
getValue logLevel = null
getValue allowjavascript = null
AppletRegistry.checkIn(jmol_object__78865827425629__)
call loadScript ..\..\js\core\corestate.z.js
viewerOptions:
{ "name":"jmol_object","applet":true,"documentBase":"http://scop.berkeley.edu/astral/jmolview/?context=0&id=d1jj2m_","platform":"J.awtjs2d.Platform","fullName":"jmol_object__78865827425629__","display":"jmol_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol.MyStatusListener object]","codeBase":"http://scop.berkeley.edu/astral/jmolview/../../js/j2s/","syncId":"78865827425629","bgcolor":"white" }
(C) 2012 Jmol Development
Jmol Version: 13.2.7 $Date: 2013-10-01 11:35:15 -0500 (Tue, 01 Oct 2013) $
java.vendor: j2s
java.version: 0.0
os.name: j2s
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmol_object (signed)
starting HoverWatcher_1
getValue emulate = null
defaults = "Jmol"
getValue boxbgcolor = null
getValue bgcolor = white
backgroundColor = "white"
getValue ANIMFRAMECallback = null
getValue APPLETREADYCallback = Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
getValue ATOMMOVEDCallback = null
getValue CLICKCallback = null
getValue ECHOCallback = null
getValue ERRORCallback = null
getValue EVALCallback = null
getValue HOVERCallback = null
getValue LOADSTRUCTCallback = null
getValue MEASURECallback = null
getValue MESSAGECallback = null
getValue MINIMIZATIONCallback = null
getValue PICKCallback = null
getValue RESIZECallback = null
getValue SCRIPTCallback = null
getValue SYNCCallback = null
getValue STRUCTUREMODIFIEDCallback = null
getValue doTranslate = null
language=en_US
getValue popupMenu = null
getValue script = null
Jmol applet jmol_object__78865827425629__ ready
call loadScript ..\..\js\core\corescript.z.js
call loadScript ..\..\js\J\script\FileLoadThread.js
starting QueueThread0_2
script 1 started
FileManager.getAtomSetCollectionFromFile(../../downloads/pdbstyle/pdbstyle-2.08/jj/d1jj2m_.ent)
starting HoverWatcher_3
FileManager opening 1 http://scop.berkeley.edu/downloads/pdbstyle/pdbstyle-2.08/jj/d1jj2m_.ent
The Resolver thinks Pdb
call loadScript ..\..\js\core\corebio.z.js
SCOPe/ASTRAL domain d1jj2m_ [63098] 16-OCT-21 0000
Time for openFile(../../downloads/pdbstyle/pdbstyle-2.08/jj/d1jj2m_.ent): 816 ms
reading 1444 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
1444 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 13.2.7 $Date: 2013-10-01 11:35:15 -0500 (Tue, 01 Oct 2013) $ DSSP analysis for model 1.1 - 0000
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer for our purposes. At this point in time, we make no guarantee
that this code gives precisely the same analysis as the code available via license
from CMBI at http://swift.cmbi.ru.nl/gv/dssp
All bioshapes have been deleted and must be regenerated.
SCOPe/ASTRAL domain d1jj2m_ [63098] 16-OCT-21 0000
1444 atoms selected
Script completed
Jmol script terminated
