SPACI score report for 3ekn in ASTRAL 2.06:

PDB Entry: 3ekn
SPACI score: 0.39
AEROSPACI score: 0.39

Experiment type: XRAY
Resolution: 2.2
R-factor: 0.214
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 1
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -1.621
WCK2 WHAT_CHECK Ramachandran: -0.133
WCK3 WHAT_CHECK Chi angles: -0.736
WCK4 WHAT_CHECK Backbone: 3.344

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).