SPACI score report for 2c9j in ASTRAL 2.05:

PDB Entry: 2c9j
SPACI score: 0.64
AEROSPACI score: 0.64

Experiment type: XRAY
Resolution: 1.35
R-factor: 0.229
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 2
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.96
WCK2 WHAT_CHECK Ramachandran: 0.974
WCK3 WHAT_CHECK Chi angles: -0.841
WCK4 WHAT_CHECK Backbone: 0.937

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).