SPACI score report for 1y69 in ASTRAL 2.04:

PDB Entry: 1y69
SPACI score: 0.06
AEROSPACI score: 0.06

Experiment type: XRAY
Resolution: 3.33
R-factor: 0.275
PCK1 PROCHECK Ramachandran: 2
PCK2 PROCHECK Chi-1 angle: 3
PCK3 PROCHECK H-bonds: 3
WCK1 WHAT_CHECK Packing: -4.739
WCK2 WHAT_CHECK Ramachandran: -6.678
WCK3 WHAT_CHECK Chi angles: -5.681
WCK4 WHAT_CHECK Backbone: -1.753

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).