SPACI score report for 2by5 in ASTRAL 2.01:

PDB Entry: 2by5
SPACI score: 0.82
AEROSPACI score: 0.82

Experiment type: XRAY
Resolution: 1.3
R-factor: 0.104
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 1
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: 3.573
WCK2 WHAT_CHECK Ramachandran: -0.278
WCK3 WHAT_CHECK Chi angles: 0.433
WCK4 WHAT_CHECK Backbone: 2.025

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).